Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
HOXD3P31249 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 NABP1-203ENST00000409510 843 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.23□□□□□ -0.29
HOXD3P31249 AC108073.2-201ENST00000464002 357 ntBASIC13.23□□□□□ -0.29
HOXD3P31249 RPS15P9-201ENST00000494093 319 ntBASIC13.23□□□□□ -0.29
HOXD3P31249 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.23□□□□□ -0.29
HOXD3P31249 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.23□□□□□ -0.29
HOXD3P31249 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD3P31249 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
HOXD3P31249 MIR4469-201ENST00000583919 79 ntBASIC13.23□□□□□ -0.29
HOXD3P31249 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
HOXD3P31249 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD3P31249 AL805961.1-202ENST00000641562 540 ntBASIC13.23□□□□□ -0.29
HOXD3P31249 AC092865.6-201ENST00000642101 219 ntBASIC13.23□□□□□ -0.29
HOXD3P31249 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD3P31249 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXD3P31249 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
HOXD3P31249 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXD3P31249 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXD3P31249 BOC-212ENST00000485230 2173 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
HOXD3P31249 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HOXD3P31249 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HOXD3P31249 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXD3P31249 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
HOXD3P31249 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXD3P31249 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.22□□□□□ -0.29
HOXD3P31249 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.22□□□□□ -0.29
HOXD3P31249 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.22□□□□□ -0.29
HOXD3P31249 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
HOXD3P31249 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.22□□□□□ -0.29
HOXD3P31249 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 LINC02084-201ENST00000606069 1096 ntBASIC13.22□□□□□ -0.29
HOXD3P31249 AL078644.1-201ENST00000609881 752 ntBASIC13.22□□□□□ -0.29
HOXD3P31249 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD3P31249 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD3P31249 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HOXD3P31249 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HOXD3P31249 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HOXD3P31249 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 AC007326.2-201ENST00000624224 7579 ntBASIC13.21□□□□□ -0.29
HOXD3P31249 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
HOXD3P31249 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HOXD3P31249 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HOXD3P31249 AL590787.1-201ENST00000568856 1315 ntBASIC13.21□□□□□ -0.29
HOXD3P31249 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXD3P31249 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXD3P31249 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXD3P31249 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC13.21□□□□□ -0.29
HOXD3P31249 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HOXD3P31249 AP002414.1-201ENST00000391405 1147 ntBASIC13.21□□□□□ -0.29
HOXD3P31249 PTCHD3P3-201ENST00000403073 906 ntBASIC13.21□□□□□ -0.29
HOXD3P31249 MCCD1P2-201ENST00000423228 335 ntBASIC13.21□□□□□ -0.29
HOXD3P31249 HTR5BP-201ENST00000430851 1154 ntBASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms