Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.28■□□□□ 0.2
SDC1P18827 AP002490.2-201ENST00000524791 560 ntBASIC16.28■□□□□ 0.2
SDC1P18827 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.28■□□□□ 0.2
SDC1P18827 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.28■□□□□ 0.2
SDC1P18827 AL445228.2-201ENST00000605589 952 ntBASIC16.28■□□□□ 0.2
SDC1P18827 AP001269.4-201ENST00000609611 512 ntBASIC16.28■□□□□ 0.2
SDC1P18827 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.28■□□□□ 0.2
SDC1P18827 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
SDC1P18827 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
SDC1P18827 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.28■□□□□ 0.2
SDC1P18827 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SDC1P18827 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SDC1P18827 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SDC1P18827 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.28■□□□□ 0.2
SDC1P18827 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SDC1P18827 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDC1P18827 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SDC1P18827 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDC1P18827 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.27■□□□□ 0.2
SDC1P18827 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDC1P18827 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDC1P18827 AC079328.2-201ENST00000561241 3354 ntBASIC16.27■□□□□ 0.2
SDC1P18827 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDC1P18827 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SDC1P18827 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SDC1P18827 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SDC1P18827 AP002414.1-201ENST00000391405 1147 ntBASIC16.27■□□□□ 0.2
SDC1P18827 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SDC1P18827 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SDC1P18827 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SDC1P18827 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.27■□□□□ 0.2
SDC1P18827 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.27■□□□□ 0.2
SDC1P18827 AC010331.1-201ENST00000611423 582 ntBASIC16.27■□□□□ 0.2
SDC1P18827 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SDC1P18827 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC1P18827 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SDC1P18827 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
SDC1P18827 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
SDC1P18827 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC1P18827 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.27■□□□□ 0.2
SDC1P18827 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SDC1P18827 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDC1P18827 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDC1P18827 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
SDC1P18827 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
SDC1P18827 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDC1P18827 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SDC1P18827 AP005117.1-201ENST00000584346 1413 ntBASIC16.27■□□□□ 0.19
SDC1P18827 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SDC1P18827 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SDC1P18827 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC1P18827 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC1P18827 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SDC1P18827 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.26■□□□□ 0.19
SDC1P18827 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC1P18827 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
SDC1P18827 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.26■□□□□ 0.19
SDC1P18827 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC1P18827 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.26■□□□□ 0.19
SDC1P18827 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC1P18827 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.26■□□□□ 0.19
SDC1P18827 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
SDC1P18827 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC1P18827 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.26■□□□□ 0.19
SDC1P18827 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.26■□□□□ 0.19
SDC1P18827 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.26■□□□□ 0.19
SDC1P18827 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.26■□□□□ 0.19
SDC1P18827 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.26■□□□□ 0.19
SDC1P18827 AC093458.2-201ENST00000623150 629 ntBASIC16.26■□□□□ 0.19
SDC1P18827 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 AL391256.1-201ENST00000443260 1855 ntBASIC16.26■□□□□ 0.19
SDC1P18827 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.26■□□□□ 0.19
SDC1P18827 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SDC1P18827 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SDC1P18827 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDC1P18827 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SDC1P18827 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms