Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.44■□□□□ 0.38
VCANP13611 ACTG1P4-201ENST00000425123 1122 ntBASIC17.44■□□□□ 0.38
VCANP13611 AC142381.1-201ENST00000426099 345 ntBASIC17.44■□□□□ 0.38
VCANP13611 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.44■□□□□ 0.38
VCANP13611 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.44■□□□□ 0.38
VCANP13611 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.44■□□□□ 0.38
VCANP13611 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.44■□□□□ 0.38
VCANP13611 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
VCANP13611 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.44■□□□□ 0.38
VCANP13611 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
VCANP13611 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.43■□□□□ 0.38
VCANP13611 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.43■□□□□ 0.38
VCANP13611 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.43■□□□□ 0.38
VCANP13611 AC023310.3-201ENST00000557027 670 ntBASIC17.43■□□□□ 0.38
VCANP13611 AC100756.1-201ENST00000562736 682 ntBASIC17.43■□□□□ 0.38
VCANP13611 AC138749.3-201ENST00000567691 622 ntBASIC17.43■□□□□ 0.38
VCANP13611 AC116165.1-201ENST00000611806 668 ntBASIC17.43■□□□□ 0.38
VCANP13611 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VCANP13611 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 AL096828.2-201ENST00000567259 1965 ntBASIC17.43■□□□□ 0.38
VCANP13611 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.43■□□□□ 0.38
VCANP13611 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.43■□□□□ 0.38
VCANP13611 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.43■□□□□ 0.38
VCANP13611 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 GMCL1P1-201ENST00000463439 1581 ntBASIC17.43■□□□□ 0.38
VCANP13611 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.43■□□□□ 0.38
VCANP13611 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.43■□□□□ 0.38
VCANP13611 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
VCANP13611 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.43■□□□□ 0.38
VCANP13611 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.43■□□□□ 0.38
VCANP13611 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.43■□□□□ 0.38
VCANP13611 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VCANP13611 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 FOXO1B-201ENST00000504678 1527 ntBASIC17.43■□□□□ 0.38
VCANP13611 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 MIR33B-201ENST00000385104 96 ntBASIC17.43■□□□□ 0.38
VCANP13611 NUS1P3-201ENST00000423502 862 ntBASIC17.43■□□□□ 0.38
VCANP13611 TMEM198B-204ENST00000484016 896 ntBASIC17.43■□□□□ 0.38
VCANP13611 AC109462.3-201ENST00000573934 613 ntBASIC17.43■□□□□ 0.38
VCANP13611 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VCANP13611 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.43■□□□□ 0.38
VCANP13611 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VCANP13611 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VCANP13611 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.42■□□□□ 0.38
VCANP13611 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.42■□□□□ 0.38
VCANP13611 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.42■□□□□ 0.38
VCANP13611 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.42■□□□□ 0.38
VCANP13611 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
VCANP13611 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VCANP13611 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.42■□□□□ 0.38
VCANP13611 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VCANP13611 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.42■□□□□ 0.38
VCANP13611 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.42■□□□□ 0.38
VCANP13611 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.42■□□□□ 0.38
VCANP13611 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.42■□□□□ 0.38
VCANP13611 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.42■□□□□ 0.38
VCANP13611 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.42■□□□□ 0.38
VCANP13611 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 AL033527.5-201ENST00000641382 801 ntBASIC17.42■□□□□ 0.38
VCANP13611 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.42■□□□□ 0.38
VCANP13611 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
VCANP13611 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
VCANP13611 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
VCANP13611 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.42■□□□□ 0.38
VCANP13611 AP001889.1-201ENST00000525414 633 ntBASIC17.42■□□□□ 0.38
VCANP13611 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VCANP13611 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.42■□□□□ 0.38
VCANP13611 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VCANP13611 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.41■□□□□ 0.38
VCANP13611 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms