Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGB1P09429 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGB1P09429 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGB1P09429 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGB1P09429 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.13■□□□□ 0.81
HMGB1P09429 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.13■□□□□ 0.81
HMGB1P09429 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 KRT18P27-201ENST00000427733 1299 ntBASIC20.13■□□□□ 0.81
HMGB1P09429 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGB1P09429 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGB1P09429 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
HMGB1P09429 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.13■□□□□ 0.81
HMGB1P09429 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.13■□□□□ 0.81
HMGB1P09429 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGB1P09429 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGB1P09429 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGB1P09429 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGB1P09429 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB1P09429 AC006504.4-201ENST00000592118 1568 ntBASIC20.12■□□□□ 0.81
HMGB1P09429 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGB1P09429 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
HMGB1P09429 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
HMGB1P09429 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
HMGB1P09429 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
HMGB1P09429 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.12■□□□□ 0.81
HMGB1P09429 FAAHP1-202ENST00000446499 1238 ntBASIC20.12■□□□□ 0.81
HMGB1P09429 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HMGB1P09429 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGB1P09429 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.12■□□□□ 0.81
HMGB1P09429 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
HMGB1P09429 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.12■□□□□ 0.81
HMGB1P09429 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGB1P09429 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.12■□□□□ 0.81
HMGB1P09429 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
HMGB1P09429 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
HMGB1P09429 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
HMGB1P09429 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
HMGB1P09429 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.12■□□□□ 0.81
HMGB1P09429 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGB1P09429 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGB1P09429 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
HMGB1P09429 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGB1P09429 RPS2P28-201ENST00000314255 741 ntBASIC20.11■□□□□ 0.81
HMGB1P09429 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGB1P09429 ELK2BP-201ENST00000415014 1224 ntBASIC20.11■□□□□ 0.81
HMGB1P09429 AL450487.1-201ENST00000426799 995 ntBASIC20.11■□□□□ 0.81
HMGB1P09429 RPS2P1-201ENST00000434010 821 ntBASIC20.11■□□□□ 0.81
HMGB1P09429 FAM197Y8-203ENST00000450145 560 ntBASIC20.11■□□□□ 0.81
HMGB1P09429 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.11■□□□□ 0.81
HMGB1P09429 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.11■□□□□ 0.81
HMGB1P09429 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.11■□□□□ 0.81
HMGB1P09429 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.11■□□□□ 0.81
HMGB1P09429 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
HMGB1P09429 LINC00895-201ENST00000629028 1637 ntBASIC20.11■□□□□ 0.81
HMGB1P09429 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HMGB1P09429 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
HMGB1P09429 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.11■□□□□ 0.81
HMGB1P09429 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.11■□□□□ 0.81
HMGB1P09429 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
HMGB1P09429 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB1P09429 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.1■□□□□ 0.81
HMGB1P09429 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms