Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.28□□□□□ -0.28
CXCL1P09341 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
CXCL1P09341 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC13.28□□□□□ -0.28
CXCL1P09341 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC13.28□□□□□ -0.28
CXCL1P09341 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC13.28□□□□□ -0.28
CXCL1P09341 AF186192.3-201ENST00000583427 947 ntBASIC13.28□□□□□ -0.28
CXCL1P09341 AC008687.5-201ENST00000593746 558 ntBASIC13.28□□□□□ -0.28
CXCL1P09341 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC13.28□□□□□ -0.28
CXCL1P09341 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.28□□□□□ -0.28
CXCL1P09341 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.28□□□□□ -0.28
CXCL1P09341 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC13.28□□□□□ -0.28
CXCL1P09341 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 NORAD-201ENST00000565493 5339 ntBASIC13.28□□□□□ -0.28
CXCL1P09341 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.28□□□□□ -0.28
CXCL1P09341 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CXCL1P09341 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CXCL1P09341 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
CXCL1P09341 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.27□□□□□ -0.28
CXCL1P09341 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CXCL1P09341 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.28
CXCL1P09341 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.27□□□□□ -0.28
CXCL1P09341 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.27□□□□□ -0.28
CXCL1P09341 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
CXCL1P09341 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.27□□□□□ -0.28
CXCL1P09341 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CXCL1P09341 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CXCL1P09341 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CXCL1P09341 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
CXCL1P09341 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
CXCL1P09341 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CXCL1P09341 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
CXCL1P09341 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CXCL1P09341 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 MESTP1-201ENST00000404287 994 ntBASIC13.27□□□□□ -0.29
CXCL1P09341 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 MFAP1P1-201ENST00000442257 1255 ntBASIC13.27□□□□□ -0.29
CXCL1P09341 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
CXCL1P09341 RNA5SP413-201ENST00000516373 109 ntBASIC13.27□□□□□ -0.29
CXCL1P09341 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
CXCL1P09341 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC13.27□□□□□ -0.29
CXCL1P09341 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.27□□□□□ -0.29
CXCL1P09341 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.27□□□□□ -0.29
CXCL1P09341 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.27□□□□□ -0.29
CXCL1P09341 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CXCL1P09341 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.27□□□□□ -0.29
CXCL1P09341 AC009949.1-201ENST00000623048 1830 ntBASIC13.27□□□□□ -0.29
CXCL1P09341 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
CXCL1P09341 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.27□□□□□ -0.29
CXCL1P09341 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC13.27□□□□□ -0.29
CXCL1P09341 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CXCL1P09341 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.27□□□□□ -0.29
CXCL1P09341 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CXCL1P09341 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 HLA-A-202ENST00000376806 1854 ntBASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms