Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 HCG4-201ENST00000418983 998 ntBASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMIM28A0A1B0GU29 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 FZD10-202ENST00000539839 3282 ntBASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 CNN2P11-201ENST00000429351 262 ntBASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 MPDU1-223ENST00000582151 728 ntBASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 AC099522.2-201ENST00000607001 744 ntBASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 AL023806.1-201ENST00000603994 1649 ntBASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMIM28A0A1B0GU29 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMIM28A0A1B0GU29 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SMIM28A0A1B0GU29 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms