Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.61■□□□□ 0.41
CDX2Q99626 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.61■□□□□ 0.41
CDX2Q99626 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.61■□□□□ 0.41
CDX2Q99626 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.61■□□□□ 0.41
CDX2Q99626 IGHJ2P-201ENST00000454480 60 ntBASIC17.61■□□□□ 0.41
CDX2Q99626 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.61■□□□□ 0.41
CDX2Q99626 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.61■□□□□ 0.41
CDX2Q99626 SLC25A47P1-201ENST00000531577 414 ntBASIC17.61■□□□□ 0.41
CDX2Q99626 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.61■□□□□ 0.41
CDX2Q99626 AP001350.2-201ENST00000625104 1094 ntBASIC17.61■□□□□ 0.41
CDX2Q99626 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CDX2Q99626 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX2Q99626 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CDX2Q99626 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.6■□□□□ 0.41
CDX2Q99626 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.6■□□□□ 0.41
CDX2Q99626 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
CDX2Q99626 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.6■□□□□ 0.41
CDX2Q99626 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.6■□□□□ 0.41
CDX2Q99626 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.6■□□□□ 0.41
CDX2Q99626 FXNP2-201ENST00000411625 547 ntBASIC17.6■□□□□ 0.41
CDX2Q99626 MPRIPP1-201ENST00000452433 1089 ntBASIC17.6■□□□□ 0.41
CDX2Q99626 KRT8P13-201ENST00000463294 1010 ntBASIC17.6■□□□□ 0.41
CDX2Q99626 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 C2orf69P2-201ENST00000562032 1123 ntBASIC17.6■□□□□ 0.41
CDX2Q99626 AC091167.2-201ENST00000579581 588 ntBASIC17.6■□□□□ 0.41
CDX2Q99626 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CDX2Q99626 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CDX2Q99626 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.6■□□□□ 0.41
CDX2Q99626 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDX2Q99626 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
CDX2Q99626 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CDX2Q99626 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.59■□□□□ 0.41
CDX2Q99626 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX2Q99626 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX2Q99626 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX2Q99626 FO681548.1-201ENST00000455617 1132 ntBASIC17.59■□□□□ 0.41
CDX2Q99626 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.59■□□□□ 0.41
CDX2Q99626 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.59■□□□□ 0.41
CDX2Q99626 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.59■□□□□ 0.41
CDX2Q99626 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX2Q99626 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX2Q99626 AC016629.1-201ENST00000596579 586 ntBASIC17.59■□□□□ 0.41
CDX2Q99626 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.59■□□□□ 0.41
CDX2Q99626 AC021097.1-201ENST00000607902 574 ntBASIC17.59■□□□□ 0.41
CDX2Q99626 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX2Q99626 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
CDX2Q99626 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX2Q99626 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX2Q99626 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDX2Q99626 CDC14C-201ENST00000428251 1719 ntBASIC17.58■□□□□ 0.41
CDX2Q99626 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.58■□□□□ 0.41
CDX2Q99626 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDX2Q99626 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDX2Q99626 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX2Q99626 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX2Q99626 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDX2Q99626 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX2Q99626 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.58■□□□□ 0.4
CDX2Q99626 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.58■□□□□ 0.4
CDX2Q99626 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX2Q99626 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms