Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 GPX1P2-201ENST00000429271 606 ntBASIC20.26■□□□□ 0.83
CTR9Q6PD62 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 AC055717.3-201ENST00000622967 595 ntBASIC20.26■□□□□ 0.83
CTR9Q6PD62 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 AC011270.2-201ENST00000624293 2550 ntBASIC20.26■□□□□ 0.83
CTR9Q6PD62 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CTR9Q6PD62 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.25■□□□□ 0.83
CTR9Q6PD62 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.25■□□□□ 0.83
CTR9Q6PD62 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC20.25■□□□□ 0.83
CTR9Q6PD62 DUX4L17-201ENST00000557360 1267 ntBASIC20.25■□□□□ 0.83
CTR9Q6PD62 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.25■□□□□ 0.83
CTR9Q6PD62 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CTR9Q6PD62 MTDHP5-201ENST00000598980 586 ntBASIC20.25■□□□□ 0.83
CTR9Q6PD62 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC20.25■□□□□ 0.83
CTR9Q6PD62 FRMD8P1-201ENST00000440433 1524 ntBASIC20.25■□□□□ 0.83
CTR9Q6PD62 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.25■□□□□ 0.83
CTR9Q6PD62 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 AC139713.2-201ENST00000641328 2723 ntBASIC20.25■□□□□ 0.83
CTR9Q6PD62 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTR9Q6PD62 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.24■□□□□ 0.83
CTR9Q6PD62 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 PDPK2P-202ENST00000562415 1191 ntBASIC20.24■□□□□ 0.83
CTR9Q6PD62 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 AC023141.13-201ENST00000604991 943 ntBASIC20.24■□□□□ 0.83
CTR9Q6PD62 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTR9Q6PD62 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.24■□□□□ 0.83
CTR9Q6PD62 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTR9Q6PD62 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTR9Q6PD62 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTR9Q6PD62 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTR9Q6PD62 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.23■□□□□ 0.83
CTR9Q6PD62 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms