Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 AC139887.3-201ENST00000568585 713 ntBASIC20.66■□□□□ 0.9
VPS53Q5VIR6 AL139424.1-201ENST00000607572 797 ntBASIC20.66■□□□□ 0.9
VPS53Q5VIR6 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 AC243591.1-201ENST00000452967 1364 ntBASIC20.66■□□□□ 0.9
VPS53Q5VIR6 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 LINC02012-201ENST00000608206 1725 ntBASIC20.66■□□□□ 0.9
VPS53Q5VIR6 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 AC060834.1-201ENST00000443027 2032 ntBASIC20.66■□□□□ 0.9
VPS53Q5VIR6 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS53Q5VIR6 NKILA-202ENST00000614771 2598 ntBASIC20.66■□□□□ 0.9
VPS53Q5VIR6 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 AC092053.1-201ENST00000605787 1936 ntBASIC20.65■□□□□ 0.9
VPS53Q5VIR6 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 AL590787.1-201ENST00000568856 1315 ntBASIC20.65■□□□□ 0.9
VPS53Q5VIR6 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 AC008735.5-201ENST00000623544 497 ntBASIC20.65■□□□□ 0.9
VPS53Q5VIR6 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VPS53Q5VIR6 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
VPS53Q5VIR6 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.64■□□□□ 0.9
VPS53Q5VIR6 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS53Q5VIR6 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.64■□□□□ 0.9
VPS53Q5VIR6 OR6D1P-203ENST00000641209 4860 ntBASIC20.64■□□□□ 0.9
VPS53Q5VIR6 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS53Q5VIR6 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.64■□□□□ 0.9
VPS53Q5VIR6 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS53Q5VIR6 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS53Q5VIR6 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS53Q5VIR6 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 AC011676.5-201ENST00000624864 2660 ntBASIC20.63■□□□□ 0.89
VPS53Q5VIR6 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms