Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.63■□□□□ 0.25
HNF4AP41235 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.63■□□□□ 0.25
HNF4AP41235 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HNF4AP41235 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HNF4AP41235 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
HNF4AP41235 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 BX005266.1-201ENST00000473402 457 ntBASIC16.62■□□□□ 0.25
HNF4AP41235 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
HNF4AP41235 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.62■□□□□ 0.25
HNF4AP41235 KRT126P-201ENST00000549467 1181 ntBASIC16.62■□□□□ 0.25
HNF4AP41235 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HNF4AP41235 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.62■□□□□ 0.25
HNF4AP41235 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.62■□□□□ 0.25
HNF4AP41235 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 AC008608.2-201ENST00000606089 416 ntBASIC16.62■□□□□ 0.25
HNF4AP41235 REXO1L6P-202ENST00000619970 1078 ntBASIC16.62■□□□□ 0.25
HNF4AP41235 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.62■□□□□ 0.25
HNF4AP41235 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 AC092053.1-201ENST00000605787 1936 ntBASIC16.62■□□□□ 0.25
HNF4AP41235 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HNF4AP41235 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.61■□□□□ 0.25
HNF4AP41235 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HNF4AP41235 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.61■□□□□ 0.25
HNF4AP41235 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
HNF4AP41235 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.61■□□□□ 0.25
HNF4AP41235 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.61■□□□□ 0.25
HNF4AP41235 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HNF4AP41235 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.61■□□□□ 0.25
HNF4AP41235 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.61■□□□□ 0.25
HNF4AP41235 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 AF238378.1-201ENST00000526806 358 ntBASIC16.61■□□□□ 0.25
HNF4AP41235 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.61■□□□□ 0.25
HNF4AP41235 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.61■□□□□ 0.25
HNF4AP41235 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HNF4AP41235 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.6■□□□□ 0.25
HNF4AP41235 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HNF4AP41235 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HNF4AP41235 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 RBM17P3-201ENST00000417687 1192 ntBASIC16.6■□□□□ 0.25
HNF4AP41235 SAPCD2P3-201ENST00000455031 850 ntBASIC16.6■□□□□ 0.25
HNF4AP41235 AC106795.1-205ENST00000512851 1056 ntBASIC16.6■□□□□ 0.25
HNF4AP41235 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.6■□□□□ 0.25
HNF4AP41235 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.6■□□□□ 0.25
HNF4AP41235 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms