Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.37■□□□□ 0.21
MSX2P35548 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.37■□□□□ 0.21
MSX2P35548 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.37■□□□□ 0.21
MSX2P35548 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.37■□□□□ 0.21
MSX2P35548 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.37■□□□□ 0.21
MSX2P35548 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.37■□□□□ 0.21
MSX2P35548 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.37■□□□□ 0.21
MSX2P35548 EGLN1P1-201ENST00000531623 762 ntBASIC16.37■□□□□ 0.21
MSX2P35548 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.37■□□□□ 0.21
MSX2P35548 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 TMEM191A-211ENST00000637163 1067 ntBASIC16.37■□□□□ 0.21
MSX2P35548 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
MSX2P35548 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.37■□□□□ 0.21
MSX2P35548 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
MSX2P35548 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.37■□□□□ 0.21
MSX2P35548 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
MSX2P35548 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
MSX2P35548 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
MSX2P35548 AL391256.1-201ENST00000443260 1855 ntBASIC16.36■□□□□ 0.21
MSX2P35548 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 MTCL1P1-201ENST00000446207 792 ntBASIC16.36■□□□□ 0.21
MSX2P35548 ECEL1P2-202ENST00000465689 757 ntBASIC16.36■□□□□ 0.21
MSX2P35548 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
MSX2P35548 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.36■□□□□ 0.21
MSX2P35548 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.36■□□□□ 0.21
MSX2P35548 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
MSX2P35548 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 AL391807.1-203ENST00000604392 2365 ntBASIC16.36■□□□□ 0.21
MSX2P35548 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
MSX2P35548 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
MSX2P35548 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
MSX2P35548 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.36■□□□□ 0.21
MSX2P35548 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.36■□□□□ 0.21
MSX2P35548 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.35■□□□□ 0.21
MSX2P35548 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms