Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SCN4AP35499 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN4AP35499 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SCN4AP35499 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
SCN4AP35499 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SCN4AP35499 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN4AP35499 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.89■□□□□ 0.77
SCN4AP35499 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SCN4AP35499 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN4AP35499 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN4AP35499 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
SCN4AP35499 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SCN4AP35499 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC19.89■□□□□ 0.77
SCN4AP35499 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC19.89■□□□□ 0.77
SCN4AP35499 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.89■□□□□ 0.77
SCN4AP35499 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC19.89■□□□□ 0.77
SCN4AP35499 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCN4AP35499 TECR-220ENST00000600083 1204 ntTSL 2 BASIC19.89■□□□□ 0.77
SCN4AP35499 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN4AP35499 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.89■□□□□ 0.77
SCN4AP35499 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN4AP35499 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCN4AP35499 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.89■□□□□ 0.77
SCN4AP35499 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.89■□□□□ 0.77
SCN4AP35499 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCN4AP35499 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN4AP35499 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SCN4AP35499 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 AC099548.2-209ENST00000480264 625 ntBASIC19.88■□□□□ 0.77
SCN4AP35499 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SCN4AP35499 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.88■□□□□ 0.77
SCN4AP35499 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC19.88■□□□□ 0.77
SCN4AP35499 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.88■□□□□ 0.77
SCN4AP35499 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.88■□□□□ 0.77
SCN4AP35499 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC19.88■□□□□ 0.77
SCN4AP35499 WFDC1-204ENST00000613603 549 ntBASIC19.88■□□□□ 0.77
SCN4AP35499 GPR182-203ENST00000622922 591 ntBASIC19.88■□□□□ 0.77
SCN4AP35499 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SCN4AP35499 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.88■□□□□ 0.77
SCN4AP35499 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN4AP35499 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN4AP35499 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 AC073439.1-201ENST00000624121 1774 ntBASIC19.88■□□□□ 0.77
SCN4AP35499 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SCN4AP35499 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.88■□□□□ 0.77
SCN4AP35499 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.88■□□□□ 0.77
SCN4AP35499 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN4AP35499 HAUS4P1-201ENST00000406739 1145 ntBASIC19.88■□□□□ 0.77
SCN4AP35499 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.88■□□□□ 0.77
SCN4AP35499 FTH1-202ENST00000526640 786 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN4AP35499 RRP7BP-205ENST00000566851 833 ntBASIC19.88■□□□□ 0.77
SCN4AP35499 KRT8P12-202ENST00000472924 1397 ntBASIC19.88■□□□□ 0.77
SCN4AP35499 AC020907.1-201ENST00000616460 1350 ntBASIC19.88■□□□□ 0.77
SCN4AP35499 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
SCN4AP35499 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SCN4AP35499 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC19.87■□□□□ 0.77
SCN4AP35499 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.87■□□□□ 0.77
SCN4AP35499 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.87■□□□□ 0.77
SCN4AP35499 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 MIR1908-201ENST00000410394 80 ntBASIC19.87■□□□□ 0.77
SCN4AP35499 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC19.87■□□□□ 0.77
SCN4AP35499 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC19.87■□□□□ 0.77
SCN4AP35499 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC19.87■□□□□ 0.77
SCN4AP35499 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC19.87■□□□□ 0.77
SCN4AP35499 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 AC010319.3-201ENST00000597028 470 ntBASIC19.87■□□□□ 0.77
SCN4AP35499 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN4AP35499 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SCN4AP35499 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.86■□□□□ 0.77
SCN4AP35499 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 MIR6869-201ENST00000619434 62 ntBASIC19.86■□□□□ 0.77
SCN4AP35499 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.86■□□□□ 0.77
SCN4AP35499 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SCN4AP35499 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SCN4AP35499 EGFEM1P-202ENST00000431685 1563 ntBASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms