Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
UBFD1O14562 AL020989.1-201ENST00000422979 469 ntBASIC16.61■□□□□ 0.25
UBFD1O14562 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.61■□□□□ 0.25
UBFD1O14562 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.61■□□□□ 0.25
UBFD1O14562 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 AL049597.2-201ENST00000565575 961 ntBASIC16.61■□□□□ 0.25
UBFD1O14562 MIR3180-1-201ENST00000580374 94 ntBASIC16.61■□□□□ 0.25
UBFD1O14562 MIR3180-3-201ENST00000584616 94 ntBASIC16.61■□□□□ 0.25
UBFD1O14562 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
UBFD1O14562 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.61■□□□□ 0.25
UBFD1O14562 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
UBFD1O14562 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.61■□□□□ 0.25
UBFD1O14562 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
UBFD1O14562 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 AC008741.2-201ENST00000612792 3115 ntBASIC16.61■□□□□ 0.25
UBFD1O14562 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.61■□□□□ 0.25
UBFD1O14562 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UBFD1O14562 ALOX12P2-203ENST00000570921 1945 ntBASIC16.6■□□□□ 0.25
UBFD1O14562 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.6■□□□□ 0.25
UBFD1O14562 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
UBFD1O14562 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
UBFD1O14562 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.6■□□□□ 0.25
UBFD1O14562 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
UBFD1O14562 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.6■□□□□ 0.25
UBFD1O14562 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 ACTG1P4-201ENST00000425123 1122 ntBASIC16.6■□□□□ 0.25
UBFD1O14562 LINC00265-3P-201ENST00000447588 903 ntBASIC16.6■□□□□ 0.25
UBFD1O14562 SIGLEC30P-201ENST00000455569 941 ntBASIC16.6■□□□□ 0.25
UBFD1O14562 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
UBFD1O14562 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 AC114341.1-201ENST00000618070 349 ntBASIC16.6■□□□□ 0.25
UBFD1O14562 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.6■□□□□ 0.25
UBFD1O14562 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
UBFD1O14562 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.6■□□□□ 0.25
UBFD1O14562 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
UBFD1O14562 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 AC046158.3-201ENST00000624947 2558 ntBASIC16.6■□□□□ 0.25
UBFD1O14562 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
UBFD1O14562 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.6■□□□□ 0.25
UBFD1O14562 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UBFD1O14562 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.6■□□□□ 0.25
UBFD1O14562 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.59■□□□□ 0.25
UBFD1O14562 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
UBFD1O14562 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
UBFD1O14562 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.59■□□□□ 0.25
UBFD1O14562 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
UBFD1O14562 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
UBFD1O14562 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.59■□□□□ 0.25
UBFD1O14562 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.59■□□□□ 0.25
UBFD1O14562 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.59■□□□□ 0.25
UBFD1O14562 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.59■□□□□ 0.25
UBFD1O14562 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.59■□□□□ 0.25
UBFD1O14562 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.59■□□□□ 0.25
UBFD1O14562 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.59■□□□□ 0.25
UBFD1O14562 TUBB8P12-201ENST00000308911 1335 ntBASIC16.59■□□□□ 0.25
UBFD1O14562 TUBB7P-202ENST00000428444 1305 ntBASIC16.59■□□□□ 0.25
UBFD1O14562 TUBB8P7-204ENST00000567960 1332 ntBASIC16.59■□□□□ 0.25
UBFD1O14562 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
UBFD1O14562 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
UBFD1O14562 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 CYP2T1P-202ENST00000641596 2535 ntBASIC16.59■□□□□ 0.25
UBFD1O14562 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UBFD1O14562 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
UBFD1O14562 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.59■□□□□ 0.25
UBFD1O14562 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
UBFD1O14562 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
UBFD1O14562 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
UBFD1O14562 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.58■□□□□ 0.25
UBFD1O14562 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
UBFD1O14562 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms