Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RTFDC1Q9BY42 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RTFDC1Q9BY42 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RTFDC1Q9BY42 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
RTFDC1Q9BY42 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 AC133963.1-201ENST00000504166 1679 ntBASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTFDC1Q9BY42 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 AL138918.1-201ENST00000568306 659 ntBASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 AL590560.3-201ENST00000623350 461 ntBASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 AL390961.4-201ENST00000623958 2535 ntBASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 AC016027.1-202ENST00000607927 1699 ntBASIC20.61■□□□□ 0.89
RTFDC1Q9BY42 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 AC142381.1-201ENST00000426099 345 ntBASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 AC025048.6-201ENST00000634326 1161 ntBASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 AL358472.5-202ENST00000641448 1267 ntBASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 AC100757.3-201ENST00000622361 1406 ntBASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 AC008764.6-201ENST00000595909 2069 ntBASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
RTFDC1Q9BY42 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 PIN1P1-201ENST00000412108 996 ntBASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 AL662799.1-202ENST00000614205 422 ntBASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 AC073592.8-201ENST00000624126 511 ntBASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTFDC1Q9BY42 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms