Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.26■□□□□ 0.03
SPENQ96T58 AL513480.1-201ENST00000451731 511 ntBASIC15.26■□□□□ 0.03
SPENQ96T58 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.26■□□□□ 0.03
SPENQ96T58 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.26■□□□□ 0.03
SPENQ96T58 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.26■□□□□ 0.03
SPENQ96T58 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.26■□□□□ 0.03
SPENQ96T58 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SPENQ96T58 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 HMGA1P7-201ENST00000406908 502 ntBASIC15.26■□□□□ 0.03
SPENQ96T58 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.26■□□□□ 0.03
SPENQ96T58 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SPENQ96T58 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SPENQ96T58 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.25■□□□□ 0.03
SPENQ96T58 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.25■□□□□ 0.03
SPENQ96T58 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.25■□□□□ 0.03
SPENQ96T58 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
SPENQ96T58 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.25■□□□□ 0.03
SPENQ96T58 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.25■□□□□ 0.03
SPENQ96T58 API5-211ENST00000534695 560 ntTSL 5 BASIC15.25■□□□□ 0.03
SPENQ96T58 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.25■□□□□ 0.03
SPENQ96T58 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.25■□□□□ 0.03
SPENQ96T58 AKAP8P1-201ENST00000434743 1349 ntBASIC15.25■□□□□ 0.03
SPENQ96T58 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.25■□□□□ 0.03
SPENQ96T58 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SPENQ96T58 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 AC142381.1-201ENST00000426099 345 ntBASIC15.24■□□□□ 0.03
SPENQ96T58 RPS2P32-201ENST00000439199 892 ntBASIC15.24■□□□□ 0.03
SPENQ96T58 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.24■□□□□ 0.03
SPENQ96T58 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.24■□□□□ 0.03
SPENQ96T58 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.24■□□□□ 0.03
SPENQ96T58 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.24■□□□□ 0.03
SPENQ96T58 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.24■□□□□ 0.03
SPENQ96T58 AC009118.2-201ENST00000613275 655 ntBASIC15.24■□□□□ 0.03
SPENQ96T58 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.24■□□□□ 0.03
SPENQ96T58 AC138969.3-201ENST00000546612 1459 ntBASIC15.24■□□□□ 0.03
SPENQ96T58 AC138932.2-201ENST00000548268 1459 ntBASIC15.24■□□□□ 0.03
SPENQ96T58 AC126755.4-201ENST00000549796 1459 ntBASIC15.24■□□□□ 0.03
SPENQ96T58 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SPENQ96T58 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.24■□□□□ 0.03
SPENQ96T58 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SPENQ96T58 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SPENQ96T58 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SPENQ96T58 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.23■□□□□ 0.03
SPENQ96T58 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms