Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.18□□□□□ -1.261e-7■□□□□ 9.1
UPF1Q92900 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC7.08□□□□□ -1.281e-7■□□□□ 9.1
UPF1Q92900 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.331e-7■□□□□ 9.1
UPF1Q92900 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.52□□□□□ -1.371e-7■□□□□ 9.1
UPF1Q92900 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC27.9■■■□□ 2.069e-6■□□□□ 9.1
UPF1Q92900 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC24.57■■□□□ 1.529e-6■□□□□ 9.1
UPF1Q92900 ASGR1-207ENST00000574330 887 ntTSL 524.33■■□□□ 1.499e-6■□□□□ 9.1
UPF1Q92900 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC22.66■■□□□ 1.221e-9■□□□□ 9.1
UPF1Q92900 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.79e-6■□□□□ 9.1
UPF1Q92900 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.41■□□□□ 0.79e-6■□□□□ 9.1
UPF1Q92900 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC18.89■□□□□ 0.619e-6■□□□□ 9.1
UPF1Q92900 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.417e-7■□□□□ 9.1
UPF1Q92900 SEC62-207ENST00000480708 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.679e-6■□□□□ 9.1
UPF1Q92900 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.019e-6■□□□□ 9.1
UPF1Q92900 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC8.66□□□□□ -1.027e-7■□□□□ 9.1
UPF1Q92900 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC18.45■□□□□ 0.547e-8■□□□□ 9.1
UPF1Q92900 ASB1-208ENST00000481566 701 ntTSL 522.57■■□□□ 1.26e-8■□□□□ 9.1
UPF1Q92900 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.372e-35■□□□□ 9.1
UPF1Q92900 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.236e-8■□□□□ 9.1
UPF1Q92900 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.781e-18■□□□□ 9.1
UPF1Q92900 ACLY-207ENST00000590151 4309 ntAPPRIS P4 TSL 1 (best) BASIC9.88□□□□□ -0.833e-8■□□□□ 9.1
UPF1Q92900 ACLY-202ENST00000353196 4318 ntAPPRIS ALT1 TSL 5 BASIC9.83□□□□□ -0.843e-8■□□□□ 9.1
UPF1Q92900 ACLY-201ENST00000352035 4339 ntAPPRIS P4 TSL 1 (best) BASIC9.46□□□□□ -0.93e-8■□□□□ 9.1
UPF1Q92900 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.054e-12■□□□□ 9.1
UPF1Q92900 CACYBP-209ENST00000613570 2835 ntTSL 2 BASIC8.83□□□□□ -14e-12■□□□□ 9.1
UPF1Q92900 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.782e-14■□□□□ 9.1
UPF1Q92900 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC15.66■□□□□ 0.11e-7■□□□□ 9.1
UPF1Q92900 GPATCH11-202ENST00000409774 3906 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -11e-7■□□□□ 9.1
UPF1Q92900 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC7.53□□□□□ -1.21e-7■□□□□ 9.1
UPF1Q92900 AL132671.2-201ENST00000467125 930 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.131e-6■□□□□ 9.1
UPF1Q92900 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.13■□□□□ 0.011e-6■□□□□ 9.1
UPF1Q92900 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.091e-6■□□□□ 9.1
UPF1Q92900 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.99□□□□□ -0.331e-6■□□□□ 9.1
UPF1Q92900 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.882e-7■□□□□ 9.1
UPF1Q92900 FOPNL-206ENST00000573968 2039 ntTSL 2 BASIC9.1□□□□□ -0.952e-7■□□□□ 9.1
UPF1Q92900 PIP4K2B-202ENST00000617499 547 ntTSL 427.77■■■□□ 2.042e-7■□□□□ 9
UPF1Q92900 PIP4K2B-203ENST00000617781 927 ntTSL 217.01■□□□□ 0.312e-7■□□□□ 9
UPF1Q92900 RPL23-203ENST00000394332 625 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.282e-7■□□□□ 9
UPF1Q92900 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.65■□□□□ 0.262e-7■□□□□ 9
UPF1Q92900 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.162e-7■□□□□ 9
UPF1Q92900 RPL23-204ENST00000394333 444 ntTSL 2 BASIC15.92■□□□□ 0.142e-7■□□□□ 9
UPF1Q92900 RPL23-206ENST00000479035 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.452e-7■□□□□ 9
UPF1Q92900 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC29.46■■■□□ 2.313e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC27.27■■□□□ 1.963e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-224ENST00000581718 574 ntTSL 226.89■■□□□ 1.93e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-228ENST00000584141 564 ntTSL 226.89■■□□□ 1.93e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.98■■□□□ 1.753e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-203ENST00000472367 794 ntTSL 325.12■■□□□ 1.613e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-212ENST00000483588 688 ntTSL 323.61■■□□□ 1.373e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-229ENST00000584177 574 ntTSL 423.38■■□□□ 1.333e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC19.83■□□□□ 0.773e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC19.83■□□□□ 0.773e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC19.47■□□□□ 0.713e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-215ENST00000491009 863 ntTSL 219.26■□□□□ 0.673e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-206ENST00000477249 891 ntTSL 518.91■□□□□ 0.623e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-219ENST00000578757 920 ntTSL 1 (best)18.91■□□□□ 0.623e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC18.82■□□□□ 0.63e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC18.46■□□□□ 0.553e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-217ENST00000497774 1662 ntTSL 516.43■□□□□ 0.223e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-227ENST00000583400 712 ntTSL 416.21■□□□□ 0.193e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-207ENST00000478103 712 ntTSL 315.19■□□□□ 0.023e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-201ENST00000460249 773 ntTSL 315.14■□□□□ 0.013e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-204ENST00000475947 598 ntTSL 215.14■□□□□ 0.013e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-222ENST00000580770 572 ntTSL 415.14■□□□□ 0.013e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-223ENST00000581361 843 ntTSL 1 (best) BASIC14.27□□□□□ -0.133e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-221ENST00000580180 753 ntTSL 213.97□□□□□ -0.173e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-210ENST00000481898 993 ntTSL 1 (best)12.61□□□□□ -0.393e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-230ENST00000584926 604 ntTSL 512.61□□□□□ -0.393e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC12.11□□□□□ -0.473e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-216ENST00000492250 565 ntTSL 511.66□□□□□ -0.543e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-211ENST00000483140 936 ntTSL 26.71□□□□□ -1.343e-61■□□□□ 9
UPF1Q92900 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.233e-9■□□□□ 9
UPF1Q92900 CDK12-208ENST00000584336 1963 nt12.91□□□□□ -0.343e-9■□□□□ 9
UPF1Q92900 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC23.75■■□□□ 1.396e-9■□□□□ 9
UPF1Q92900 NOP58-202ENST00000426814 655 ntTSL 221.27■■□□□ 16e-9■□□□□ 9
UPF1Q92900 NOP58-208ENST00000488403 871 ntTSL 221.27■■□□□ 16e-9■□□□□ 9
UPF1Q92900 NOP58-205ENST00000472050 582 ntTSL 318.21■□□□□ 0.516e-9■□□□□ 9
UPF1Q92900 SMIM30-201ENST00000397764 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.176e-9■□□□□ 9
UPF1Q92900 NOP58-204ENST00000467734 638 ntTSL 515.88■□□□□ 0.136e-9■□□□□ 9
UPF1Q92900 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.046e-9■□□□□ 9
UPF1Q92900 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.156e-9■□□□□ 9
UPF1Q92900 UBBP4-201ENST00000583708 689 ntBASIC12.15□□□□□ -0.461e-8■□□□□ 9
UPF1Q92900 SNHG16-207ENST00000590435 1947 ntTSL 5 BASIC12.11□□□□□ -0.476e-9■□□□□ 9
UPF1Q92900 SNHG16-202ENST00000493536 2424 ntTSL 1 (best)10.31□□□□□ -0.766e-9■□□□□ 9
UPF1Q92900 NOP58-209ENST00000492688 571 ntTSL 410.12□□□□□ -0.796e-9■□□□□ 9
UPF1Q92900 GNL3L-202ENST00000360845 2135 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.82e-6■□□□□ 9
UPF1Q92900 SNHG16-201ENST00000448136 3607 ntTSL 1 (best) BASIC9.56□□□□□ -0.886e-9■□□□□ 9
UPF1Q92900 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC9.04□□□□□ -0.962e-6■□□□□ 9
UPF1Q92900 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.162e-6■□□□□ 9
UPF1Q92900 SUMF2-214ENST00000452216 913 ntTSL 1 (best)27.07■■□□□ 1.923e-6■□□□□ 9
UPF1Q92900 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.253e-6■□□□□ 9
UPF1Q92900 SUMF2-219ENST00000531229 737 ntTSL 220.53■□□□□ 0.883e-6■□□□□ 9
UPF1Q92900 UGGT1-203ENST00000418197 599 ntTSL 514.06□□□□□ -0.163e-6■□□□□ 9
UPF1Q92900 UGGT1-206ENST00000465836 517 ntTSL 28.48□□□□□ -1.053e-6■□□□□ 9
UPF1Q92900 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC34.2■■■■□ 3.072e-6■□□□□ 9
UPF1Q92900 KCTD15-204ENST00000587658 632 ntTSL 333.72■■■□□ 2.992e-6■□□□□ 9
UPF1Q92900 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.952e-6■□□□□ 9
UPF1Q92900 KCTD15-205ENST00000588637 571 ntTSL 524.99■■□□□ 1.592e-6■□□□□ 9
UPF1Q92900 KCTD15-209ENST00000590771 577 ntTSL 322.77■■□□□ 1.242e-6■□□□□ 9
UPF1Q92900 KCTD15-203ENST00000587559 622 ntTSL 421.75■■□□□ 1.072e-6■□□□□ 9
Retrieved 100 of 15,879 protein–RNA pairs in 309.3 ms