Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.9■□□□□ 0.46
HDAC4P56524 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
HDAC4P56524 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
HDAC4P56524 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
HDAC4P56524 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
HDAC4P56524 AC092068.3-201ENST00000587894 2016 ntBASIC17.9■□□□□ 0.46
HDAC4P56524 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HDAC4P56524 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.9■□□□□ 0.46
HDAC4P56524 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.9■□□□□ 0.46
HDAC4P56524 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.9■□□□□ 0.46
HDAC4P56524 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.9■□□□□ 0.46
HDAC4P56524 AC139887.3-201ENST00000568585 713 ntBASIC17.9■□□□□ 0.46
HDAC4P56524 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.9■□□□□ 0.46
HDAC4P56524 AL031008.1-201ENST00000619963 541 ntBASIC17.9■□□□□ 0.46
HDAC4P56524 AC004706.3-202ENST00000621574 984 ntBASIC17.9■□□□□ 0.46
HDAC4P56524 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
HDAC4P56524 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.9■□□□□ 0.46
HDAC4P56524 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HDAC4P56524 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 AC124067.4-201ENST00000519691 2379 ntBASIC17.9■□□□□ 0.46
HDAC4P56524 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.9■□□□□ 0.46
HDAC4P56524 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.9■□□□□ 0.46
HDAC4P56524 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HDAC4P56524 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.9■□□□□ 0.46
HDAC4P56524 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.9■□□□□ 0.46
HDAC4P56524 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
HDAC4P56524 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
HDAC4P56524 AC004870.1-201ENST00000315132 882 ntBASIC17.89■□□□□ 0.45
HDAC4P56524 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.89■□□□□ 0.45
HDAC4P56524 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.89■□□□□ 0.45
HDAC4P56524 AC018712.1-201ENST00000455767 687 ntBASIC17.89■□□□□ 0.45
HDAC4P56524 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 RNPS1P1-201ENST00000507437 918 ntBASIC17.89■□□□□ 0.45
HDAC4P56524 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HDAC4P56524 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.89■□□□□ 0.45
HDAC4P56524 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.89■□□□□ 0.45
HDAC4P56524 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.89■□□□□ 0.45
HDAC4P56524 AC104692.2-201ENST00000603054 253 ntBASIC17.89■□□□□ 0.45
HDAC4P56524 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 AC107918.4-202ENST00000641623 219 ntBASIC17.89■□□□□ 0.45
HDAC4P56524 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 AL121761.2-201ENST00000598007 1648 ntBASIC17.89■□□□□ 0.45
HDAC4P56524 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HDAC4P56524 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.89■□□□□ 0.45
HDAC4P56524 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.89■□□□□ 0.45
HDAC4P56524 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.89■□□□□ 0.45
HDAC4P56524 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HDAC4P56524 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC4P56524 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HDAC4P56524 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.88■□□□□ 0.45
HDAC4P56524 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HDAC4P56524 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 AD000864.1-201ENST00000624076 2295 ntBASIC17.88■□□□□ 0.45
HDAC4P56524 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HDAC4P56524 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.88■□□□□ 0.45
HDAC4P56524 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.88■□□□□ 0.45
HDAC4P56524 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms