Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC23.44■■□□□ 1.34
MSH6P52701 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
MSH6P52701 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
MSH6P52701 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
MSH6P52701 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
MSH6P52701 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
MSH6P52701 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
MSH6P52701 FAM86MP-201ENST00000340703 885 ntBASIC23.43■■□□□ 1.34
MSH6P52701 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
MSH6P52701 PP14571-201ENST00000404327 934 ntTSL 2 BASIC23.43■■□□□ 1.34
MSH6P52701 RPL37AP1-201ENST00000412502 279 ntBASIC23.43■■□□□ 1.34
MSH6P52701 AL353705.2-201ENST00000428243 662 ntBASIC23.43■■□□□ 1.34
MSH6P52701 TTTY23B-201ENST00000442790 549 ntBASIC23.43■■□□□ 1.34
MSH6P52701 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC23.43■■□□□ 1.34
MSH6P52701 AC093004.1-201ENST00000508850 424 ntBASIC23.43■■□□□ 1.34
MSH6P52701 FAM8A2P-201ENST00000528813 1142 ntBASIC23.43■■□□□ 1.34
MSH6P52701 WT1-AS_2.1-201ENST00000613208 137 ntBASIC23.43■■□□□ 1.34
MSH6P52701 SPTSSB-204ENST00000617024 1292 ntBASIC23.43■■□□□ 1.34
MSH6P52701 AC007431.3-201ENST00000623221 587 ntBASIC23.43■■□□□ 1.34
MSH6P52701 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
MSH6P52701 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC23.43■■□□□ 1.34
MSH6P52701 AL138781.2-201ENST00000617896 1843 ntBASIC23.43■■□□□ 1.34
MSH6P52701 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
MSH6P52701 BTBD7P1-201ENST00000447253 1453 ntBASIC23.43■■□□□ 1.34
MSH6P52701 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
MSH6P52701 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
MSH6P52701 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC23.43■■□□□ 1.34
MSH6P52701 SLC22A20-204ENST00000530038 1673 ntBASIC23.43■■□□□ 1.34
MSH6P52701 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
MSH6P52701 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC23.43■■□□□ 1.34
MSH6P52701 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
MSH6P52701 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC23.42■■□□□ 1.34
MSH6P52701 HLA-H-201ENST00000383620 1096 ntBASIC23.42■■□□□ 1.34
MSH6P52701 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
MSH6P52701 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC23.42■■□□□ 1.34
MSH6P52701 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC23.42■■□□□ 1.34
MSH6P52701 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC23.42■■□□□ 1.34
MSH6P52701 ZNF890P-202ENST00000530367 1156 ntBASIC23.42■■□□□ 1.34
MSH6P52701 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC23.42■■□□□ 1.34
MSH6P52701 AC091167.2-201ENST00000579581 588 ntBASIC23.42■■□□□ 1.34
MSH6P52701 MIR4259-201ENST00000584466 101 ntBASIC23.42■■□□□ 1.34
MSH6P52701 CHCHD2P3-201ENST00000603038 451 ntBASIC23.42■■□□□ 1.34
MSH6P52701 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
MSH6P52701 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
MSH6P52701 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC23.42■■□□□ 1.34
MSH6P52701 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC23.42■■□□□ 1.34
MSH6P52701 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
MSH6P52701 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
MSH6P52701 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC23.42■■□□□ 1.34
MSH6P52701 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
MSH6P52701 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC23.42■■□□□ 1.34
MSH6P52701 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
MSH6P52701 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
MSH6P52701 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
MSH6P52701 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC23.41■■□□□ 1.34
MSH6P52701 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
MSH6P52701 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
MSH6P52701 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC23.41■■□□□ 1.34
MSH6P52701 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC23.41■■□□□ 1.34
MSH6P52701 MPV17-208ENST00000405076 603 ntTSL 5 BASIC23.41■■□□□ 1.34
MSH6P52701 CENPM-206ENST00000407253 818 ntTSL 2 BASIC23.41■■□□□ 1.34
MSH6P52701 RN7SL837P-201ENST00000463010 287 ntBASIC23.41■■□□□ 1.34
MSH6P52701 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC23.41■■□□□ 1.34
MSH6P52701 AC092552.1-201ENST00000547243 906 ntBASIC23.41■■□□□ 1.34
MSH6P52701 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC23.41■■□□□ 1.34
MSH6P52701 AL512343.1-201ENST00000605837 169 ntBASIC23.41■■□□□ 1.34
MSH6P52701 AL589739.1-201ENST00000607720 493 ntBASIC23.41■■□□□ 1.34
MSH6P52701 AC004790.1-201ENST00000612686 536 ntBASIC23.41■■□□□ 1.34
MSH6P52701 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 REXO1L6P-201ENST00000603433 1515 ntBASIC23.41■■□□□ 1.34
MSH6P52701 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC23.41■■□□□ 1.34
MSH6P52701 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC23.41■■□□□ 1.34
MSH6P52701 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC23.41■■□□□ 1.34
MSH6P52701 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
MSH6P52701 REXO1L11P-201ENST00000620964 1927 ntBASIC23.41■■□□□ 1.34
MSH6P52701 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC23.41■■□□□ 1.34
MSH6P52701 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
MSH6P52701 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
MSH6P52701 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 RPL28-204ENST00000431533 590 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 GLI4-203ENST00000517468 963 ntTSL 5 BASIC23.4■■□□□ 1.34
MSH6P52701 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC23.4■■□□□ 1.34
MSH6P52701 RPL28-206ENST00000558752 671 ntTSL 3 BASIC23.4■■□□□ 1.34
MSH6P52701 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC23.4■■□□□ 1.34
MSH6P52701 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC23.4■■□□□ 1.34
MSH6P52701 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
MSH6P52701 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
MSH6P52701 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms