Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RXRBP28702 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC22.1■■□□□ 1.13
RXRBP28702 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC22.1■■□□□ 1.13
RXRBP28702 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC22.1■■□□□ 1.13
RXRBP28702 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RXRBP28702 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC22.1■■□□□ 1.13
RXRBP28702 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RXRBP28702 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RXRBP28702 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC22.1■■□□□ 1.13
RXRBP28702 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
RXRBP28702 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
RXRBP28702 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
RXRBP28702 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
RXRBP28702 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC22.09■■□□□ 1.13
RXRBP28702 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RXRBP28702 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC22.09■■□□□ 1.13
RXRBP28702 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC22.09■■□□□ 1.13
RXRBP28702 SDHAP3-202ENST00000515467 728 ntBASIC22.09■■□□□ 1.13
RXRBP28702 RRP7BP-205ENST00000566851 833 ntBASIC22.09■■□□□ 1.13
RXRBP28702 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC22.09■■□□□ 1.13
RXRBP28702 PAM16-204ENST00000571941 674 ntTSL 3 BASIC22.09■■□□□ 1.13
RXRBP28702 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC22.09■■□□□ 1.13
RXRBP28702 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC22.09■■□□□ 1.13
RXRBP28702 SLC22A20-204ENST00000530038 1673 ntBASIC22.09■■□□□ 1.13
RXRBP28702 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
RXRBP28702 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RXRBP28702 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RXRBP28702 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC22.09■■□□□ 1.13
RXRBP28702 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC22.09■■□□□ 1.13
RXRBP28702 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC22.09■■□□□ 1.13
RXRBP28702 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC22.09■■□□□ 1.13
RXRBP28702 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
RXRBP28702 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RXRBP28702 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.08■■□□□ 1.13
RXRBP28702 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
RXRBP28702 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC22.08■■□□□ 1.13
RXRBP28702 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC22.08■■□□□ 1.13
RXRBP28702 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RXRBP28702 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RXRBP28702 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RXRBP28702 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
RXRBP28702 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC22.08■■□□□ 1.13
RXRBP28702 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC22.08■■□□□ 1.13
RXRBP28702 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
RXRBP28702 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC22.08■■□□□ 1.13
RXRBP28702 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC22.08■■□□□ 1.13
RXRBP28702 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
RXRBP28702 SERBP1P3-201ENST00000459980 809 ntBASIC22.08■■□□□ 1.13
RXRBP28702 PRYP6-201ENST00000514804 343 ntBASIC22.08■■□□□ 1.13
RXRBP28702 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC22.08■■□□□ 1.13
RXRBP28702 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC22.08■■□□□ 1.13
RXRBP28702 AL022328.1-201ENST00000610050 478 ntBASIC22.08■■□□□ 1.13
RXRBP28702 AC091271.1-201ENST00000611877 1162 ntBASIC22.08■■□□□ 1.13
RXRBP28702 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC22.08■■□□□ 1.13
RXRBP28702 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC22.08■■□□□ 1.12
RXRBP28702 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC22.08■■□□□ 1.12
RXRBP28702 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC22.08■■□□□ 1.12
RXRBP28702 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RXRBP28702 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
RXRBP28702 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
RXRBP28702 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC22.07■■□□□ 1.12
RXRBP28702 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
RXRBP28702 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.07■■□□□ 1.12
RXRBP28702 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC22.07■■□□□ 1.12
RXRBP28702 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC22.07■■□□□ 1.12
RXRBP28702 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
RXRBP28702 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC22.07■■□□□ 1.12
RXRBP28702 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
RXRBP28702 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC22.07■■□□□ 1.12
RXRBP28702 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC22.07■■□□□ 1.12
RXRBP28702 AP001889.1-201ENST00000525414 633 ntBASIC22.07■■□□□ 1.12
RXRBP28702 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 AC010328.2-201ENST00000597698 1111 ntBASIC22.07■■□□□ 1.12
RXRBP28702 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC22.07■■□□□ 1.12
RXRBP28702 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
RXRBP28702 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
RXRBP28702 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RXRBP28702 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC22.06■■□□□ 1.12
RXRBP28702 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RXRBP28702 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RXRBP28702 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
RXRBP28702 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
RXRBP28702 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC22.06■■□□□ 1.12
RXRBP28702 NUS1P3-201ENST00000423502 862 ntBASIC22.06■■□□□ 1.12
RXRBP28702 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
RXRBP28702 RPL7P3-201ENST00000441388 714 ntBASIC22.06■■□□□ 1.12
RXRBP28702 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RXRBP28702 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC22.06■■□□□ 1.12
RXRBP28702 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC22.06■■□□□ 1.12
RXRBP28702 NEU3-202ENST00000526068 431 ntTSL 2 BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms