Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
SDC1P18827 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.33■□□□□ 0.2
SDC1P18827 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.33■□□□□ 0.2
SDC1P18827 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.33■□□□□ 0.2
SDC1P18827 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.33■□□□□ 0.2
SDC1P18827 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.33■□□□□ 0.2
SDC1P18827 MIR5100-201ENST00000579544 119 ntBASIC16.33■□□□□ 0.2
SDC1P18827 AC073592.4-201ENST00000623827 446 ntBASIC16.33■□□□□ 0.2
SDC1P18827 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.33■□□□□ 0.2
SDC1P18827 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.33■□□□□ 0.2
SDC1P18827 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
SDC1P18827 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
SDC1P18827 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.33■□□□□ 0.2
SDC1P18827 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.33■□□□□ 0.2
SDC1P18827 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
SDC1P18827 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDC1P18827 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SDC1P18827 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.32■□□□□ 0.2
SDC1P18827 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.32■□□□□ 0.2
SDC1P18827 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.32■□□□□ 0.2
SDC1P18827 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 KRT18P35-201ENST00000510488 1269 ntBASIC16.32■□□□□ 0.2
SDC1P18827 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.32■□□□□ 0.2
SDC1P18827 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 DUX4L17-201ENST00000557360 1267 ntBASIC16.32■□□□□ 0.2
SDC1P18827 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.32■□□□□ 0.2
SDC1P18827 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.32■□□□□ 0.2
SDC1P18827 AC079776.2-201ENST00000641154 1609 ntBASIC16.32■□□□□ 0.2
SDC1P18827 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDC1P18827 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.32■□□□□ 0.2
SDC1P18827 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.32■□□□□ 0.2
SDC1P18827 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC1P18827 AL645728.1-201ENST00000366221 2101 ntBASIC16.31■□□□□ 0.2
SDC1P18827 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
SDC1P18827 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SDC1P18827 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.31■□□□□ 0.2
SDC1P18827 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SDC1P18827 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.31■□□□□ 0.2
SDC1P18827 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC1P18827 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.31■□□□□ 0.2
SDC1P18827 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 TUBB8P12-201ENST00000308911 1335 ntBASIC16.31■□□□□ 0.2
SDC1P18827 TUBB7P-202ENST00000428444 1305 ntBASIC16.31■□□□□ 0.2
SDC1P18827 TUBB8P7-204ENST00000567960 1332 ntBASIC16.31■□□□□ 0.2
SDC1P18827 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.31■□□□□ 0.2
SDC1P18827 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.31■□□□□ 0.2
SDC1P18827 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
SDC1P18827 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.31■□□□□ 0.2
SDC1P18827 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.31■□□□□ 0.2
SDC1P18827 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.31■□□□□ 0.2
SDC1P18827 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SDC1P18827 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.31■□□□□ 0.2
SDC1P18827 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDC1P18827 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms