Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.59■□□□□ 0.41
COL6A3P12111 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A3P12111 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.59■□□□□ 0.41
COL6A3P12111 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A3P12111 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
COL6A3P12111 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A3P12111 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.59■□□□□ 0.41
COL6A3P12111 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
COL6A3P12111 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
COL6A3P12111 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC17.59■□□□□ 0.41
COL6A3P12111 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.59■□□□□ 0.41
COL6A3P12111 AL133215.2-201ENST00000609242 977 ntBASIC17.59■□□□□ 0.41
COL6A3P12111 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.58■□□□□ 0.41
COL6A3P12111 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.58■□□□□ 0.41
COL6A3P12111 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.58■□□□□ 0.41
COL6A3P12111 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.58■□□□□ 0.41
COL6A3P12111 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A3P12111 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A3P12111 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.58■□□□□ 0.4
COL6A3P12111 FAM86HP-204ENST00000513466 959 ntBASIC17.58■□□□□ 0.4
COL6A3P12111 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.58■□□□□ 0.4
COL6A3P12111 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.58■□□□□ 0.4
COL6A3P12111 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
COL6A3P12111 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.58■□□□□ 0.4
COL6A3P12111 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A3P12111 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A3P12111 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A3P12111 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A3P12111 TPRX2P-201ENST00000535362 881 ntBASIC17.58■□□□□ 0.4
COL6A3P12111 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.58■□□□□ 0.4
COL6A3P12111 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.58■□□□□ 0.4
COL6A3P12111 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.58■□□□□ 0.4
COL6A3P12111 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
COL6A3P12111 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A3P12111 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A3P12111 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
COL6A3P12111 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A3P12111 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A3P12111 DUX4L45-201ENST00000566406 1057 ntBASIC17.57■□□□□ 0.4
COL6A3P12111 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A3P12111 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A3P12111 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A3P12111 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL6A3P12111 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A3P12111 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
COL6A3P12111 SERF2-206ENST00000409291 807 ntTSL 3 BASIC17.56■□□□□ 0.4
COL6A3P12111 HLA-C-210ENST00000640219 976 ntBASIC17.56■□□□□ 0.4
COL6A3P12111 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A3P12111 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.56■□□□□ 0.4
COL6A3P12111 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.56■□□□□ 0.4
COL6A3P12111 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.56■□□□□ 0.4
COL6A3P12111 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.56■□□□□ 0.4
COL6A3P12111 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A3P12111 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.56■□□□□ 0.4
COL6A3P12111 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.56■□□□□ 0.4
COL6A3P12111 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A3P12111 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A3P12111 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.56■□□□□ 0.4
COL6A3P12111 AP000812.2-201ENST00000538934 718 ntBASIC17.56■□□□□ 0.4
COL6A3P12111 MIR6756-201ENST00000616240 63 ntBASIC17.56■□□□□ 0.4
COL6A3P12111 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A3P12111 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.56■□□□□ 0.4
COL6A3P12111 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A3P12111 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL6A3P12111 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A3P12111 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL6A3P12111 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A3P12111 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
COL6A3P12111 AC020765.3-201ENST00000613051 740 ntBASIC17.55■□□□□ 0.4
COL6A3P12111 AL136301.1-201ENST00000615830 422 ntBASIC17.55■□□□□ 0.4
COL6A3P12111 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A3P12111 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A3P12111 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A3P12111 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A3P12111 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A3P12111 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A3P12111 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A3P12111 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms