Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGB1P09429 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.2■□□□□ 0.82
HMGB1P09429 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HMGB1P09429 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGB1P09429 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGB1P09429 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGB1P09429 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGB1P09429 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGB1P09429 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HMGB1P09429 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB1P09429 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.2■□□□□ 0.82
HMGB1P09429 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HMGB1P09429 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGB1P09429 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB1P09429 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGB1P09429 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGB1P09429 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGB1P09429 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.19■□□□□ 0.82
HMGB1P09429 DUSP5P1-201ENST00000441325 1139 ntBASIC20.19■□□□□ 0.82
HMGB1P09429 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.19■□□□□ 0.82
HMGB1P09429 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGB1P09429 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGB1P09429 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HMGB1P09429 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGB1P09429 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.19■□□□□ 0.82
HMGB1P09429 AC006557.2-201ENST00000592985 1240 ntBASIC20.19■□□□□ 0.82
HMGB1P09429 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
HMGB1P09429 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGB1P09429 AC107918.4-202ENST00000641623 219 ntBASIC20.19■□□□□ 0.82
HMGB1P09429 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.19■□□□□ 0.82
HMGB1P09429 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HMGB1P09429 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGB1P09429 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGB1P09429 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGB1P09429 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
HMGB1P09429 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
HMGB1P09429 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.18■□□□□ 0.82
HMGB1P09429 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.18■□□□□ 0.82
HMGB1P09429 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.18■□□□□ 0.82
HMGB1P09429 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.18■□□□□ 0.82
HMGB1P09429 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.18■□□□□ 0.82
HMGB1P09429 AF228730.7-201ENST00000641842 219 ntBASIC20.18■□□□□ 0.82
HMGB1P09429 OS9-205ENST00000413095 1660 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 AGGF1P2-201ENST00000426656 2106 ntBASIC20.18■□□□□ 0.82
HMGB1P09429 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGB1P09429 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGB1P09429 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
HMGB1P09429 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGB1P09429 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGB1P09429 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB1P09429 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGB1P09429 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB1P09429 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
HMGB1P09429 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGB1P09429 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB1P09429 PAWRP1-201ENST00000451083 565 ntBASIC20.17■□□□□ 0.82
HMGB1P09429 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGB1P09429 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.17■□□□□ 0.82
HMGB1P09429 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.17■□□□□ 0.82
HMGB1P09429 AC073648.2-201ENST00000510116 352 ntBASIC20.17■□□□□ 0.82
HMGB1P09429 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGB1P09429 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB1P09429 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGB1P09429 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGB1P09429 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGB1P09429 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB1P09429 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB1P09429 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
HMGB1P09429 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB1P09429 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB1P09429 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGB1P09429 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms