Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCA1O95477 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA1O95477 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
ABCA1O95477 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA1O95477 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA1O95477 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA1O95477 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA1O95477 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCA1O95477 AC023141.13-201ENST00000604991 943 ntBASIC14.39□□□□□ -0.11
ABCA1O95477 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCA1O95477 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA1O95477 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA1O95477 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA1O95477 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA1O95477 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.39□□□□□ -0.11
ABCA1O95477 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.39□□□□□ -0.11
ABCA1O95477 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
ABCA1O95477 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA1O95477 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCA1O95477 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
ABCA1O95477 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA1O95477 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 HLA-J-203ENST00000494367 1087 ntBASIC14.38□□□□□ -0.11
ABCA1O95477 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.38□□□□□ -0.11
ABCA1O95477 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA1O95477 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCA1O95477 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCA1O95477 REXO1L9P-201ENST00000604264 2108 ntBASIC14.38□□□□□ -0.11
ABCA1O95477 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
ABCA1O95477 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 BCAR1-209ENST00000546196 1340 ntBASIC14.38□□□□□ -0.11
ABCA1O95477 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ABCA1O95477 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 AP002414.1-201ENST00000391405 1147 ntBASIC14.38□□□□□ -0.11
ABCA1O95477 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
ABCA1O95477 AC190387.1-201ENST00000551683 408 ntBASIC14.38□□□□□ -0.11
ABCA1O95477 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCA1O95477 AC109462.3-201ENST00000573934 613 ntBASIC14.38□□□□□ -0.11
ABCA1O95477 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.38□□□□□ -0.11
ABCA1O95477 AL035252.4-201ENST00000624174 288 ntBASIC14.38□□□□□ -0.11
ABCA1O95477 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.38□□□□□ -0.11
ABCA1O95477 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ABCA1O95477 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.37□□□□□ -0.11
ABCA1O95477 OR6D1P-202ENST00000641007 5290 ntBASIC14.37□□□□□ -0.11
ABCA1O95477 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.37□□□□□ -0.11
ABCA1O95477 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
ABCA1O95477 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.37□□□□□ -0.11
ABCA1O95477 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.37□□□□□ -0.11
ABCA1O95477 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.37□□□□□ -0.11
ABCA1O95477 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.37□□□□□ -0.11
ABCA1O95477 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
ABCA1O95477 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
ABCA1O95477 AC091812.2-201ENST00000619081 385 ntBASIC14.37□□□□□ -0.11
ABCA1O95477 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14.37□□□□□ -0.11
ABCA1O95477 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
ABCA1O95477 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.37□□□□□ -0.11
ABCA1O95477 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
ABCA1O95477 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ABCA1O95477 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.37□□□□□ -0.11
ABCA1O95477 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms