Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CACNA1FO60840 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CACNA1FO60840 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.33■■□□□ 1.01
CACNA1FO60840 AC109635.5-201ENST00000533593 962 ntBASIC21.33■■□□□ 1.01
CACNA1FO60840 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC21.33■■□□□ 1.01
CACNA1FO60840 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.33■■□□□ 1.01
CACNA1FO60840 AL161645.1-201ENST00000622716 1255 ntBASIC21.33■■□□□ 1.01
CACNA1FO60840 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC21.33■■□□□ 1
CACNA1FO60840 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
CACNA1FO60840 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
CACNA1FO60840 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CACNA1FO60840 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC21.32■■□□□ 1
CACNA1FO60840 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
CACNA1FO60840 AP002472.1-201ENST00000577490 586 ntBASIC21.32■■□□□ 1
CACNA1FO60840 MIR3687-2-201ENST00000577708 61 ntBASIC21.32■■□□□ 1
CACNA1FO60840 MIR3687-1-201ENST00000614492 61 ntBASIC21.32■■□□□ 1
CACNA1FO60840 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 AC078925.2-201ENST00000624013 1973 ntBASIC21.32■■□□□ 1
CACNA1FO60840 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
CACNA1FO60840 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.32■■□□□ 1
CACNA1FO60840 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC21.32■■□□□ 1
CACNA1FO60840 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.32■■□□□ 1
CACNA1FO60840 AC004967.1-201ENST00000453589 447 ntBASIC21.32■■□□□ 1
CACNA1FO60840 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.32■■□□□ 1
CACNA1FO60840 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.32■■□□□ 1
CACNA1FO60840 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.32■■□□□ 1
CACNA1FO60840 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC21.32■■□□□ 1
CACNA1FO60840 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC21.32■■□□□ 1
CACNA1FO60840 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC21.32■■□□□ 1
CACNA1FO60840 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC21.32■■□□□ 1
CACNA1FO60840 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC21.31■■□□□ 1
CACNA1FO60840 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1FO60840 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC21.31■■□□□ 1
CACNA1FO60840 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1FO60840 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC21.31■■□□□ 1
CACNA1FO60840 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
CACNA1FO60840 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1FO60840 AC112482.1-201ENST00000492080 688 ntBASIC21.31■■□□□ 1
CACNA1FO60840 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1FO60840 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1FO60840 AC009093.7-201ENST00000623853 1223 ntBASIC21.31■■□□□ 1
CACNA1FO60840 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.31■■□□□ 1
CACNA1FO60840 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1FO60840 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1FO60840 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1FO60840 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1FO60840 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC21.31■■□□□ 1
CACNA1FO60840 FOXO1B-201ENST00000504678 1527 ntBASIC21.31■■□□□ 1
CACNA1FO60840 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CACNA1FO60840 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1FO60840 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC21.31■■□□□ 1
CACNA1FO60840 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CACNA1FO60840 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CACNA1FO60840 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CACNA1FO60840 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.31■■□□□ 1
CACNA1FO60840 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC21.3■■□□□ 1
CACNA1FO60840 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.3■■□□□ 1
CACNA1FO60840 PTMS-202ENST00000389462 773 ntTSL 2 BASIC21.3■■□□□ 1
CACNA1FO60840 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.3■■□□□ 1
CACNA1FO60840 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC21.3■■□□□ 1
CACNA1FO60840 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC21.3■■□□□ 1
CACNA1FO60840 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CACNA1FO60840 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC21.3■■□□□ 1
CACNA1FO60840 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
CACNA1FO60840 STOM-202ENST00000347359 870 ntTSL 2 BASIC21.3■■□□□ 1
CACNA1FO60840 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC21.3■■□□□ 1
CACNA1FO60840 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 AC023141.5-201ENST00000458585 616 ntBASIC21.3■■□□□ 1
CACNA1FO60840 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
CACNA1FO60840 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
CACNA1FO60840 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.3■■□□□ 1
CACNA1FO60840 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms