Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 FAM197Y8-203ENST00000450145 560 ntBASIC15.1■□□□□ 0.01
LMX1BO60663 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.1■□□□□ 0.01
LMX1BO60663 AC005336.2-201ENST00000593183 939 ntBASIC15.1■□□□□ 0.01
LMX1BO60663 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LMX1BO60663 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.1■□□□□ 0.01
LMX1BO60663 AC139530.3-201ENST00000620344 690 ntBASIC15.1■□□□□ 0.01
LMX1BO60663 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.1■□□□□ 0.01
LMX1BO60663 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
LMX1BO60663 IL9RP2-201ENST00000423948 1312 ntBASIC15.1■□□□□ 0.01
LMX1BO60663 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1BO60663 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
LMX1BO60663 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
LMX1BO60663 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.09■□□□□ 0.01
LMX1BO60663 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
LMX1BO60663 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
LMX1BO60663 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.09■□□□□ 0.01
LMX1BO60663 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 AC093909.1-201ENST00000504731 1122 ntBASIC15.09■□□□□ 0.01
LMX1BO60663 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.09■□□□□ 0.01
LMX1BO60663 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.09■□□□□ 0.01
LMX1BO60663 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
LMX1BO60663 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.09■□□□□ 0.01
LMX1BO60663 AL671883.3-201ENST00000603274 991 ntBASIC15.09■□□□□ 0.01
LMX1BO60663 AL591684.3-201ENST00000605187 298 ntBASIC15.09■□□□□ 0.01
LMX1BO60663 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
LMX1BO60663 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.09■□□□□ 0.01
LMX1BO60663 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.09■□□□□ 0.01
LMX1BO60663 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.09■□□□□ 0.01
LMX1BO60663 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LMX1BO60663 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.09■□□□□ 0.01
LMX1BO60663 AC125634.1-201ENST00000438758 1403 ntBASIC15.09■□□□□ 0.01
LMX1BO60663 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
LMX1BO60663 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LMX1BO60663 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.08■□□□□ 0.01
LMX1BO60663 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
LMX1BO60663 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LMX1BO60663 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
LMX1BO60663 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
LMX1BO60663 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
LMX1BO60663 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
LMX1BO60663 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 MIR574-201ENST00000385209 96 ntBASIC15.08■□□□□ 0
LMX1BO60663 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 AF186996.4-201ENST00000467186 377 ntBASIC15.08■□□□□ 0
LMX1BO60663 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC15.08■□□□□ 0
LMX1BO60663 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.08■□□□□ 0
LMX1BO60663 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.08■□□□□ 0
LMX1BO60663 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
LMX1BO60663 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.08■□□□□ 0
LMX1BO60663 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
LMX1BO60663 TP73-AS1-207ENST00000624167 988 ntBASIC15.08■□□□□ 0
LMX1BO60663 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.08■□□□□ 0
LMX1BO60663 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
LMX1BO60663 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
LMX1BO60663 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
LMX1BO60663 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0
LMX1BO60663 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms