Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
CUX2O14529 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
CUX2O14529 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
CUX2O14529 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC28.88■■■□□ 2.21
CUX2O14529 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
CUX2O14529 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC28.88■■■□□ 2.21
CUX2O14529 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC28.87■■■□□ 2.21
CUX2O14529 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC28.87■■■□□ 2.21
CUX2O14529 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC28.87■■■□□ 2.21
CUX2O14529 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
CUX2O14529 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
CUX2O14529 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC28.87■■■□□ 2.21
CUX2O14529 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC28.87■■■□□ 2.21
CUX2O14529 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC28.87■■■□□ 2.21
CUX2O14529 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
CUX2O14529 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC28.87■■■□□ 2.21
CUX2O14529 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC28.87■■■□□ 2.21
CUX2O14529 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
CUX2O14529 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC28.87■■■□□ 2.21
CUX2O14529 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
CUX2O14529 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC28.87■■■□□ 2.21
CUX2O14529 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC28.87■■■□□ 2.21
CUX2O14529 AL589739.1-201ENST00000607720 493 ntBASIC28.87■■■□□ 2.21
CUX2O14529 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC28.87■■■□□ 2.21
CUX2O14529 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
CUX2O14529 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
CUX2O14529 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
CUX2O14529 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC28.87■■■□□ 2.21
CUX2O14529 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
CUX2O14529 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
CUX2O14529 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
CUX2O14529 CALR4P-201ENST00000431943 946 ntBASIC28.86■■■□□ 2.21
CUX2O14529 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC28.86■■■□□ 2.21
CUX2O14529 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC28.86■■■□□ 2.21
CUX2O14529 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
CUX2O14529 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC28.86■■■□□ 2.21
CUX2O14529 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC28.86■■■□□ 2.21
CUX2O14529 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
CUX2O14529 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
CUX2O14529 AC018665.1-201ENST00000622927 1362 ntBASIC28.86■■■□□ 2.21
CUX2O14529 ENSA-206ENST00000361631 725 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX2O14529 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC28.85■■■□□ 2.21
CUX2O14529 AGER-203ENST00000375065 665 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX2O14529 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 FAM21FP-201ENST00000426241 1131 ntBASIC28.85■■■□□ 2.21
CUX2O14529 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX2O14529 AC007551.1-201ENST00000457394 519 ntBASIC28.85■■■□□ 2.21
CUX2O14529 KRT8P13-201ENST00000463294 1010 ntBASIC28.85■■■□□ 2.21
CUX2O14529 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX2O14529 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC28.85■■■□□ 2.21
CUX2O14529 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX2O14529 AC123567.1-201ENST00000548294 1261 ntBASIC28.85■■■□□ 2.21
CUX2O14529 BANF1P1-201ENST00000553684 263 ntBASIC28.85■■■□□ 2.21
CUX2O14529 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC28.85■■■□□ 2.21
CUX2O14529 AL118558.3-201ENST00000607414 1079 ntBASIC28.85■■■□□ 2.21
CUX2O14529 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC28.85■■■□□ 2.21
CUX2O14529 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC28.85■■■□□ 2.21
CUX2O14529 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC28.85■■■□□ 2.21
CUX2O14529 AL135999.2-201ENST00000622438 1686 ntBASIC28.85■■■□□ 2.21
CUX2O14529 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 AC114501.2-201ENST00000439631 535 ntBASIC28.85■■■□□ 2.21
CUX2O14529 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC28.85■■■□□ 2.21
CUX2O14529 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC28.85■■■□□ 2.21
CUX2O14529 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC28.85■■■□□ 2.21
CUX2O14529 LITAF-210ENST00000571976 548 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX2O14529 LITAF-214ENST00000574703 486 ntTSL 2 BASIC28.85■■■□□ 2.21
CUX2O14529 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC28.85■■■□□ 2.21
CUX2O14529 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC28.85■■■□□ 2.21
CUX2O14529 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
CUX2O14529 AC012569.1-201ENST00000591191 1524 ntBASIC28.84■■■□□ 2.21
CUX2O14529 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC28.84■■■□□ 2.21
CUX2O14529 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC28.84■■■□□ 2.21
CUX2O14529 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC28.84■■■□□ 2.21
CUX2O14529 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX2O14529 NARF-206ENST00000457415 1668 ntTSL 5 BASIC28.84■■■□□ 2.21
CUX2O14529 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC28.84■■■□□ 2.21
CUX2O14529 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC28.84■■■□□ 2.21
CUX2O14529 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
CUX2O14529 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
CUX2O14529 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC28.84■■■□□ 2.21
CUX2O14529 AC105129.2-201ENST00000559536 390 ntBASIC28.84■■■□□ 2.21
CUX2O14529 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC28.84■■■□□ 2.21
CUX2O14529 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC28.84■■■□□ 2.21
CUX2O14529 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC28.84■■■□□ 2.21
CUX2O14529 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
CUX2O14529 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
CUX2O14529 AC016027.1-202ENST00000607927 1699 ntBASIC28.83■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms