Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 GPER1-207ENST00000619052 571 ntTSL 2 BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 PP14571-201ENST00000404327 934 ntTSL 2 BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 REEP4-207ENST00000523293 913 ntTSL 3 BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
SHANK3Q9BYB0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.88■■□□□ 1.09
SHANK3Q9BYB0 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 AC093525.9-201ENST00000624961 1746 ntBASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 AC079776.1-201ENST00000401540 1152 ntBASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 API5-211ENST00000534695 560 ntTSL 5 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 AC140912.1-201ENST00000577171 1054 ntBASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 PRR29-204ENST00000577953 565 ntTSL 4 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 AL133215.2-201ENST00000609242 977 ntBASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC21.87■■□□□ 1.09
SHANK3Q9BYB0 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 SLC9A3P2-201ENST00000447821 2021 ntBASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 CDK4-206ENST00000549606 558 ntTSL 2 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 RNA5-8SN1-201ENST00000610460 153 ntBASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 RNA5-8SN5-202ENST00000612463 153 ntBASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 RNA5-8SN4-201ENST00000613359 153 ntBASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 RNA5-8SN5-201ENST00000619471 153 ntBASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 HLA-H-201ENST00000383620 1096 ntBASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 PGF-202ENST00000405431 666 ntTSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 SPDYE18-201ENST00000510091 1050 ntBASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 STOM-203ENST00000538954 1257 ntTSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 AC104794.3-201ENST00000566840 1248 ntBASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms