Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM3Q53GG5 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 RNPS1P1-201ENST00000507437 918 ntBASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 TPSP2-201ENST00000561760 610 ntBASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 AL390719.2-201ENST00000606993 987 ntBASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 REXO1L11P-201ENST00000620964 1927 ntBASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 NKILA-202ENST00000614771 2598 ntBASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 AC022211.2-201ENST00000585075 2527 ntBASIC14.3□□□□□ -0.12
PDLIM3Q53GG5 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 MIR940-201ENST00000401276 94 ntBASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 PGAM5P1-201ENST00000518923 814 ntBASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AC106730.1-201ENST00000566722 1090 ntBASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AC239800.4-201ENST00000603712 296 ntBASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AC011676.5-201ENST00000624864 2660 ntBASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.29□□□□□ -0.12
PDLIM3Q53GG5 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms