Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 IGHV3-47-201ENST00000425060 335 ntBASIC16.62■□□□□ 0.25
FOXA1P55317 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 NUS1P1-201ENST00000446295 882 ntBASIC16.62■□□□□ 0.25
FOXA1P55317 KRT17P6-201ENST00000453795 1220 ntBASIC16.62■□□□□ 0.25
FOXA1P55317 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXA1P55317 MINOS1P3-201ENST00000457048 203 ntBASIC16.62■□□□□ 0.25
FOXA1P55317 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.62■□□□□ 0.25
FOXA1P55317 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXA1P55317 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.62■□□□□ 0.25
FOXA1P55317 Z69720.1-201ENST00000601483 472 ntBASIC16.62■□□□□ 0.25
FOXA1P55317 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
FOXA1P55317 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA1P55317 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXA1P55317 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.62■□□□□ 0.25
FOXA1P55317 AC006449.5-201ENST00000610658 2098 ntBASIC16.61■□□□□ 0.25
FOXA1P55317 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
FOXA1P55317 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
FOXA1P55317 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.61■□□□□ 0.25
FOXA1P55317 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.61■□□□□ 0.25
FOXA1P55317 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.61■□□□□ 0.25
FOXA1P55317 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 LINC02199-201ENST00000506655 2702 ntBASIC16.61■□□□□ 0.25
FOXA1P55317 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
FOXA1P55317 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.61■□□□□ 0.25
FOXA1P55317 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.61■□□□□ 0.25
FOXA1P55317 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
FOXA1P55317 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
FOXA1P55317 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.61■□□□□ 0.25
FOXA1P55317 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.61■□□□□ 0.25
FOXA1P55317 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.61■□□□□ 0.25
FOXA1P55317 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
FOXA1P55317 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
FOXA1P55317 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
FOXA1P55317 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.61■□□□□ 0.25
FOXA1P55317 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.61■□□□□ 0.25
FOXA1P55317 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.61■□□□□ 0.25
FOXA1P55317 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
FOXA1P55317 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.61■□□□□ 0.25
FOXA1P55317 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA1P55317 AC008741.2-201ENST00000612792 3115 ntBASIC16.61■□□□□ 0.25
FOXA1P55317 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
FOXA1P55317 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.6■□□□□ 0.25
FOXA1P55317 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
FOXA1P55317 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA1P55317 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA1P55317 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
FOXA1P55317 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.6■□□□□ 0.25
FOXA1P55317 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
FOXA1P55317 LINC00265-3P-201ENST00000447588 903 ntBASIC16.6■□□□□ 0.25
FOXA1P55317 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.6■□□□□ 0.25
FOXA1P55317 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.6■□□□□ 0.25
FOXA1P55317 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.6■□□□□ 0.25
FOXA1P55317 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.6■□□□□ 0.25
FOXA1P55317 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.6■□□□□ 0.25
FOXA1P55317 AP000867.4-201ENST00000641616 219 ntBASIC16.6■□□□□ 0.25
FOXA1P55317 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.6■□□□□ 0.25
FOXA1P55317 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA1P55317 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms