Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC23.48■■□□□ 1.35
MSH6P52701 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH6P52701 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC23.48■■□□□ 1.35
MSH6P52701 AC008494.3-201ENST00000606615 944 ntBASIC23.48■■□□□ 1.35
MSH6P52701 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 AL139327.4-201ENST00000612362 153 ntBASIC23.48■■□□□ 1.35
MSH6P52701 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC23.48■■□□□ 1.35
MSH6P52701 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC23.48■■□□□ 1.35
MSH6P52701 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
MSH6P52701 CETN4P-206ENST00000642099 2168 ntBASIC23.48■■□□□ 1.35
MSH6P52701 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC23.48■■□□□ 1.35
MSH6P52701 AL133338.1-201ENST00000565695 1517 ntBASIC23.47■■□□□ 1.35
MSH6P52701 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 USP49-202ENST00000373010 2446 ntTSL 5 BASIC23.47■■□□□ 1.35
MSH6P52701 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC23.47■■□□□ 1.35
MSH6P52701 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC23.47■■□□□ 1.35
MSH6P52701 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC23.47■■□□□ 1.35
MSH6P52701 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
MSH6P52701 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC23.47■■□□□ 1.35
MSH6P52701 GNAQP1-201ENST00000444815 1067 ntBASIC23.47■■□□□ 1.35
MSH6P52701 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC23.47■■□□□ 1.35
MSH6P52701 AC135586.1-201ENST00000539323 574 ntBASIC23.47■■□□□ 1.35
MSH6P52701 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC23.47■■□□□ 1.35
MSH6P52701 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC23.47■■□□□ 1.35
MSH6P52701 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC23.47■■□□□ 1.35
MSH6P52701 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 STX3-203ENST00000529177 1571 ntTSL 2 BASIC23.47■■□□□ 1.35
MSH6P52701 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
MSH6P52701 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
MSH6P52701 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC23.46■■□□□ 1.35
MSH6P52701 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC23.46■■□□□ 1.35
MSH6P52701 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC23.46■■□□□ 1.35
MSH6P52701 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC23.46■■□□□ 1.35
MSH6P52701 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC23.46■■□□□ 1.35
MSH6P52701 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC23.46■■□□□ 1.35
MSH6P52701 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
MSH6P52701 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
MSH6P52701 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
MSH6P52701 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
MSH6P52701 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
MSH6P52701 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
MSH6P52701 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
MSH6P52701 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
MSH6P52701 PACS1-203ENST00000524815 628 ntTSL 4 BASIC23.45■■□□□ 1.34
MSH6P52701 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
MSH6P52701 AC073389.1-201ENST00000595595 795 ntBASIC23.45■■□□□ 1.34
MSH6P52701 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC23.45■■□□□ 1.34
MSH6P52701 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC23.45■■□□□ 1.34
MSH6P52701 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC23.45■■□□□ 1.34
MSH6P52701 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
MSH6P52701 WIZP1-201ENST00000531444 2299 ntBASIC23.45■■□□□ 1.34
MSH6P52701 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
MSH6P52701 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC23.45■■□□□ 1.34
MSH6P52701 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
MSH6P52701 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
MSH6P52701 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
MSH6P52701 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC23.44■■□□□ 1.34
MSH6P52701 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
MSH6P52701 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
MSH6P52701 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC23.44■■□□□ 1.34
MSH6P52701 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
MSH6P52701 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC23.44■■□□□ 1.34
MSH6P52701 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
MSH6P52701 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC23.44■■□□□ 1.34
MSH6P52701 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC23.44■■□□□ 1.34
MSH6P52701 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC23.44■■□□□ 1.34
MSH6P52701 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
MSH6P52701 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
MSH6P52701 AC119751.2-201ENST00000504529 210 ntBASIC23.44■■□□□ 1.34
MSH6P52701 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
MSH6P52701 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC23.44■■□□□ 1.34
MSH6P52701 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC23.44■■□□□ 1.34
MSH6P52701 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC23.44■■□□□ 1.34
MSH6P52701 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC23.44■■□□□ 1.34
MSH6P52701 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
MSH6P52701 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
MSH6P52701 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
MSH6P52701 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
MSH6P52701 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC23.44■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms