Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC6A4P31645 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SLC6A4P31645 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC6A4P31645 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC6A4P31645 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC6A4P31645 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SLC6A4P31645 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SLC6A4P31645 AL645608.8-201ENST00000606034 2086 ntBASIC17.56■□□□□ 0.4
SLC6A4P31645 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 AC129492.6-201ENST00000611383 1305 ntBASIC17.55■□□□□ 0.4
SLC6A4P31645 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
SLC6A4P31645 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.55■□□□□ 0.4
SLC6A4P31645 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.55■□□□□ 0.4
SLC6A4P31645 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.55■□□□□ 0.4
SLC6A4P31645 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.55■□□□□ 0.4
SLC6A4P31645 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.55■□□□□ 0.4
SLC6A4P31645 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SLC6A4P31645 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.55■□□□□ 0.4
SLC6A4P31645 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.55■□□□□ 0.4
SLC6A4P31645 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.55■□□□□ 0.4
SLC6A4P31645 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SLC6A4P31645 AC025580.3-201ENST00000617932 1424 ntBASIC17.55■□□□□ 0.4
SLC6A4P31645 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SLC6A4P31645 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SLC6A4P31645 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SLC6A4P31645 AL023806.1-201ENST00000603994 1649 ntBASIC17.54■□□□□ 0.4
SLC6A4P31645 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC6A4P31645 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.54■□□□□ 0.4
SLC6A4P31645 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.54■□□□□ 0.4
SLC6A4P31645 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC6A4P31645 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC6A4P31645 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SLC6A4P31645 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.54■□□□□ 0.4
SLC6A4P31645 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.54■□□□□ 0.4
SLC6A4P31645 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.54■□□□□ 0.4
SLC6A4P31645 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SLC6A4P31645 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC6A4P31645 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.54■□□□□ 0.4
SLC6A4P31645 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SLC6A4P31645 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SLC6A4P31645 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.54■□□□□ 0.4
SLC6A4P31645 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SLC6A4P31645 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.54■□□□□ 0.4
SLC6A4P31645 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.54■□□□□ 0.4
SLC6A4P31645 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.54■□□□□ 0.4
SLC6A4P31645 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SLC6A4P31645 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.54■□□□□ 0.4
SLC6A4P31645 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC6A4P31645 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SLC6A4P31645 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC6A4P31645 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SLC6A4P31645 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.53■□□□□ 0.4
SLC6A4P31645 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.53■□□□□ 0.4
SLC6A4P31645 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SLC6A4P31645 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC6A4P31645 RPSAP43-201ENST00000402237 625 ntBASIC17.53■□□□□ 0.4
SLC6A4P31645 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms