Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 AL138831.2-201ENST00000606564 490 ntBASIC13.12□□□□□ -0.31
HLA-DMBP28068 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HLA-DMBP28068 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HLA-DMBP28068 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 AL049757.1-201ENST00000616842 1596 ntBASIC13.11□□□□□ -0.31
HLA-DMBP28068 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 MYCLP1-201ENST00000372451 1075 ntBASIC13.11□□□□□ -0.31
HLA-DMBP28068 IPPK-202ENST00000375522 882 ntTSL 3 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 TSSC2-201ENST00000450217 709 ntBASIC13.11□□□□□ -0.31
HLA-DMBP28068 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 AC011840.4-201ENST00000578471 627 ntBASIC13.11□□□□□ -0.31
HLA-DMBP28068 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.11□□□□□ -0.31
HLA-DMBP28068 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HLA-DMBP28068 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms