Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 KRT16P4-201ENST00000453883 522 ntBASIC17.26■□□□□ 0.35
TRIM4Q9C037 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 SLC25A1P1-201ENST00000528351 927 ntBASIC17.26■□□□□ 0.35
TRIM4Q9C037 KRT8P26-201ENST00000534154 1276 ntBASIC17.26■□□□□ 0.35
TRIM4Q9C037 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 GMCL1P1-201ENST00000463439 1581 ntBASIC17.26■□□□□ 0.35
TRIM4Q9C037 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TRIM4Q9C037 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM4Q9C037 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 AL023806.1-201ENST00000603994 1649 ntBASIC17.25■□□□□ 0.35
TRIM4Q9C037 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 KRT18P23-201ENST00000435622 1283 ntBASIC17.25■□□□□ 0.35
TRIM4Q9C037 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM4Q9C037 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
TRIM4Q9C037 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM4Q9C037 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
TRIM4Q9C037 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM4Q9C037 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM4Q9C037 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM4Q9C037 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 MIR149-201ENST00000384879 89 ntBASIC17.24■□□□□ 0.35
TRIM4Q9C037 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM4Q9C037 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.24■□□□□ 0.35
TRIM4Q9C037 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM4Q9C037 TOB2P1-201ENST00000469761 992 ntBASIC17.24■□□□□ 0.35
TRIM4Q9C037 AC034232.1-201ENST00000506026 1064 ntBASIC17.24■□□□□ 0.35
TRIM4Q9C037 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.24■□□□□ 0.35
TRIM4Q9C037 POLD2P1-201ENST00000511220 997 ntBASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms