Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 AC103702.1-201ENST00000548801 2630 ntBASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.65■□□□□ 0.26
CLIP3Q96DZ5 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CLIP3Q96DZ5 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CLIP3Q96DZ5 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CLIP3Q96DZ5 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CLIP3Q96DZ5 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 AL136379.1-201ENST00000623471 2642 ntBASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 PRYP5-201ENST00000451909 266 ntBASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLIP3Q96DZ5 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 AC132938.5-201ENST00000624980 1813 ntBASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 SIGLEC30P-201ENST00000455569 941 ntBASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 STK19B-204ENST00000512515 211 ntBASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 RNA5SP415-201ENST00000517246 115 ntBASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 AC145285.3-201ENST00000564603 959 ntBASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 Z83851.2-201ENST00000609564 659 ntBASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 PMS2P7-201ENST00000506558 1336 ntBASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CLIP3Q96DZ5 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 NFIC-211ENST00000641145 8399 ntBASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.62■□□□□ 0.25
CLIP3Q96DZ5 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms