Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AP001258.2-201ENST00000529891 490 ntBASIC17.18■□□□□ 0.34
TTC28Q96AY4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 CHMP4BP1-201ENST00000556017 588 ntBASIC17.18■□□□□ 0.34
TTC28Q96AY4 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 AC073389.1-201ENST00000595595 795 ntBASIC17.18■□□□□ 0.34
TTC28Q96AY4 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.18■□□□□ 0.34
TTC28Q96AY4 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TTC28Q96AY4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TTC28Q96AY4 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TTC28Q96AY4 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 EIF4HP1-201ENST00000453115 687 ntBASIC17.17■□□□□ 0.34
TTC28Q96AY4 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
TTC28Q96AY4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 PHGDH-209ENST00000641074 1780 ntBASIC17.17■□□□□ 0.34
TTC28Q96AY4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TTC28Q96AY4 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TTC28Q96AY4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TTC28Q96AY4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.17■□□□□ 0.34
TTC28Q96AY4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 YBX1P6-201ENST00000442962 1002 ntBASIC17.16■□□□□ 0.34
TTC28Q96AY4 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 AL133215.2-201ENST00000609242 977 ntBASIC17.16■□□□□ 0.34
TTC28Q96AY4 AC091271.1-201ENST00000611877 1162 ntBASIC17.16■□□□□ 0.34
TTC28Q96AY4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 CDC14C-201ENST00000428251 1719 ntBASIC17.16■□□□□ 0.34
TTC28Q96AY4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 AC138028.6-201ENST00000616106 1482 ntBASIC17.16■□□□□ 0.34
TTC28Q96AY4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.16■□□□□ 0.34
TTC28Q96AY4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TTC28Q96AY4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 AC234644.1-201ENST00000406065 370 ntBASIC17.15■□□□□ 0.34
TTC28Q96AY4 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 BCRP2-202ENST00000447763 634 ntBASIC17.15■□□□□ 0.34
TTC28Q96AY4 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 BCRP6-201ENST00000510112 632 ntBASIC17.15■□□□□ 0.34
TTC28Q96AY4 BCRP7-201ENST00000511549 544 ntBASIC17.15■□□□□ 0.34
TTC28Q96AY4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms