Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 AC005332.1-201ENST00000577698 1310 ntBASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 SPDYE15P-201ENST00000424157 909 ntBASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 SEC1P-202ENST00000473944 940 ntBASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 MIR3917-201ENST00000580971 93 ntBASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
DEPDC4Q8N2C3 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 BX276092.7-203ENST00000637198 1536 ntBASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
DEPDC4Q8N2C3 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 HBZP1-201ENST00000354915 429 ntBASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 AC069148.1-201ENST00000608741 768 ntBASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 AC116407.4-201ENST00000623319 1061 ntBASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms