Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.77■□□□□ 0.92
VPS53Q5VIR6 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS53Q5VIR6 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 KRT18P67-201ENST00000432816 1264 ntBASIC20.76■□□□□ 0.91
VPS53Q5VIR6 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS53Q5VIR6 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 AC012640.2-201ENST00000561606 901 ntBASIC20.75■□□□□ 0.91
VPS53Q5VIR6 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.75■□□□□ 0.91
VPS53Q5VIR6 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS53Q5VIR6 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 FDX1P1-201ENST00000449115 551 ntBASIC20.74■□□□□ 0.91
VPS53Q5VIR6 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
VPS53Q5VIR6 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS53Q5VIR6 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms