Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.79■□□□□ 0.92
COL4A1P02462 AL161645.1-201ENST00000622716 1255 ntBASIC20.79■□□□□ 0.92
COL4A1P02462 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.79■□□□□ 0.92
COL4A1P02462 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A1P02462 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
COL4A1P02462 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A1P02462 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A1P02462 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
COL4A1P02462 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A1P02462 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A1P02462 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC20.78■□□□□ 0.92
COL4A1P02462 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC20.78■□□□□ 0.92
COL4A1P02462 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.78■□□□□ 0.92
COL4A1P02462 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL4A1P02462 ALG1L8P-201ENST00000533887 760 ntBASIC20.78■□□□□ 0.92
COL4A1P02462 RN7SL204P-201ENST00000582831 262 ntBASIC20.78■□□□□ 0.92
COL4A1P02462 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A1P02462 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
COL4A1P02462 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A1P02462 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
COL4A1P02462 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A1P02462 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.77■□□□□ 0.92
COL4A1P02462 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A1P02462 AC107890.1-201ENST00000422478 521 ntBASIC20.77■□□□□ 0.92
COL4A1P02462 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 AC140878.1-201ENST00000565277 250 ntBASIC20.77■□□□□ 0.92
COL4A1P02462 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 TOP3BP1-201ENST00000420768 1380 ntBASIC20.77■□□□□ 0.92
COL4A1P02462 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.77■□□□□ 0.92
COL4A1P02462 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.77■□□□□ 0.92
COL4A1P02462 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A1P02462 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A1P02462 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A1P02462 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
COL4A1P02462 AC067852.2-201ENST00000590513 2313 ntBASIC20.77■□□□□ 0.92
COL4A1P02462 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A1P02462 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A1P02462 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A1P02462 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A1P02462 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A1P02462 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.77■□□□□ 0.91
COL4A1P02462 MIR943-201ENST00000401286 94 ntBASIC20.77■□□□□ 0.91
COL4A1P02462 PMS2P4-201ENST00000412466 1052 ntBASIC20.77■□□□□ 0.91
COL4A1P02462 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.77■□□□□ 0.91
COL4A1P02462 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
COL4A1P02462 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.77■□□□□ 0.91
COL4A1P02462 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A1P02462 AC027307.2-201ENST00000591252 911 ntBASIC20.77■□□□□ 0.91
COL4A1P02462 CYP2A7P1-201ENST00000595391 815 ntBASIC20.77■□□□□ 0.91
COL4A1P02462 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
COL4A1P02462 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.76■□□□□ 0.91
COL4A1P02462 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL4A1P02462 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
COL4A1P02462 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.76■□□□□ 0.91
COL4A1P02462 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.76■□□□□ 0.91
COL4A1P02462 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms