Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.15■□□□□ 0.02
LMX1BO60663 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
LMX1BO60663 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.15■□□□□ 0.02
LMX1BO60663 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.15■□□□□ 0.02
LMX1BO60663 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
LMX1BO60663 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
LMX1BO60663 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LMX1BO60663 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.14■□□□□ 0.01
LMX1BO60663 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
LMX1BO60663 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1BO60663 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 AKR1C7P-201ENST00000305623 895 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
LMX1BO60663 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 PMS2P1-201ENST00000431037 1228 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1BO60663 PON3-205ENST00000451904 1053 ntTSL 3 BASIC15.14■□□□□ 0.01
LMX1BO60663 RN7SL606P-201ENST00000472779 293 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 AC002558.1-201ENST00000488906 803 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
LMX1BO60663 AP001005.1-201ENST00000571755 1248 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 AC109462.3-201ENST00000573934 613 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 AC011840.4-201ENST00000578471 627 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
LMX1BO60663 REXO1L6P-202ENST00000619970 1078 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.14■□□□□ 0.01
LMX1BO60663 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1BO60663 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 PCDHB19P-201ENST00000570871 2371 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1BO60663 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
LMX1BO60663 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 LINC02012-201ENST00000608206 1725 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 AC093525.9-201ENST00000624961 1746 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1BO60663 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1BO60663 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
LMX1BO60663 AC018695.7-201ENST00000624587 2492 ntBASIC15.14■□□□□ 0.01
LMX1BO60663 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
LMX1BO60663 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.13■□□□□ 0.01
LMX1BO60663 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
LMX1BO60663 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.13■□□□□ 0.01
LMX1BO60663 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.13■□□□□ 0.01
LMX1BO60663 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.13■□□□□ 0.01
LMX1BO60663 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.13■□□□□ 0.01
LMX1BO60663 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 RNF216P1-203ENST00000404404 2427 ntBASIC15.13■□□□□ 0.01
LMX1BO60663 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
LMX1BO60663 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.13■□□□□ 0.01
LMX1BO60663 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.13■□□□□ 0.01
LMX1BO60663 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
LMX1BO60663 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.13■□□□□ 0.01
LMX1BO60663 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.13■□□□□ 0.01
LMX1BO60663 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.13■□□□□ 0.01
LMX1BO60663 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.13■□□□□ 0.01
LMX1BO60663 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.13■□□□□ 0.01
LMX1BO60663 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.13■□□□□ 0.01
LMX1BO60663 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.13■□□□□ 0.01
LMX1BO60663 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LMX1BO60663 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LMX1BO60663 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms