Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 AC092506.1-202ENST00000401022 528 ntBASIC18.53■□□□□ 0.56
LRCH3Q96II8 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.53■□□□□ 0.56
LRCH3Q96II8 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 AP006294.1-201ENST00000415407 339 ntBASIC18.53■□□□□ 0.56
LRCH3Q96II8 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.53■□□□□ 0.56
LRCH3Q96II8 AC119751.2-201ENST00000504529 210 ntBASIC18.53■□□□□ 0.56
LRCH3Q96II8 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LRCH3Q96II8 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.53■□□□□ 0.56
LRCH3Q96II8 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
LRCH3Q96II8 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.52■□□□□ 0.56
LRCH3Q96II8 AL353779.1-201ENST00000434793 351 ntBASIC18.52■□□□□ 0.56
LRCH3Q96II8 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.52■□□□□ 0.56
LRCH3Q96II8 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.52■□□□□ 0.56
LRCH3Q96II8 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.52■□□□□ 0.56
LRCH3Q96II8 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.52■□□□□ 0.56
LRCH3Q96II8 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
LRCH3Q96II8 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.52■□□□□ 0.56
LRCH3Q96II8 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
LRCH3Q96II8 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LRCH3Q96II8 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.52■□□□□ 0.55
LRCH3Q96II8 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.52■□□□□ 0.55
LRCH3Q96II8 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LRCH3Q96II8 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 STK19B-204ENST00000512515 211 ntBASIC18.51■□□□□ 0.55
LRCH3Q96II8 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 AC018470.1-201ENST00000624790 3129 ntBASIC18.51■□□□□ 0.55
LRCH3Q96II8 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.51■□□□□ 0.55
LRCH3Q96II8 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LRCH3Q96II8 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LRCH3Q96II8 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 AIRN-201ENST00000601203 4374 ntBASIC18.5■□□□□ 0.55
LRCH3Q96II8 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LRCH3Q96II8 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms