Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.26■□□□□ 0.83
BRF1Q92994 FGFR3P6-201ENST00000457012 610 ntBASIC20.26■□□□□ 0.83
BRF1Q92994 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.26■□□□□ 0.83
BRF1Q92994 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
BRF1Q92994 SART3-203ENST00000546611 1184 ntBASIC20.26■□□□□ 0.83
BRF1Q92994 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 AC008608.2-201ENST00000606089 416 ntBASIC20.26■□□□□ 0.83
BRF1Q92994 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
BRF1Q92994 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.26■□□□□ 0.83
BRF1Q92994 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.26■□□□□ 0.83
BRF1Q92994 AC105020.1-201ENST00000435356 2205 ntBASIC20.26■□□□□ 0.83
BRF1Q92994 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRF1Q92994 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
BRF1Q92994 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
BRF1Q92994 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.25■□□□□ 0.83
BRF1Q92994 GPR89P-201ENST00000407924 1495 ntBASIC20.25■□□□□ 0.83
BRF1Q92994 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.25■□□□□ 0.83
BRF1Q92994 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.25■□□□□ 0.83
BRF1Q92994 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.25■□□□□ 0.83
BRF1Q92994 PRYP5-201ENST00000451909 266 ntBASIC20.25■□□□□ 0.83
BRF1Q92994 UNC93B7-201ENST00000509439 705 ntBASIC20.25■□□□□ 0.83
BRF1Q92994 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.25■□□□□ 0.83
BRF1Q92994 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.25■□□□□ 0.83
BRF1Q92994 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.25■□□□□ 0.83
BRF1Q92994 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.25■□□□□ 0.83
BRF1Q92994 AC064862.7-201ENST00000604520 867 ntBASIC20.25■□□□□ 0.83
BRF1Q92994 IFNL4P1-201ENST00000607083 540 ntBASIC20.25■□□□□ 0.83
BRF1Q92994 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 AL139288.1-201ENST00000623748 933 ntBASIC20.25■□□□□ 0.83
BRF1Q92994 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 FRMD8P1-201ENST00000440433 1524 ntBASIC20.25■□□□□ 0.83
BRF1Q92994 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF1Q92994 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.24■□□□□ 0.83
BRF1Q92994 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.24■□□□□ 0.83
BRF1Q92994 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.24■□□□□ 0.83
BRF1Q92994 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.24■□□□□ 0.83
BRF1Q92994 AF238378.1-201ENST00000526806 358 ntBASIC20.24■□□□□ 0.83
BRF1Q92994 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 AC124947.2-201ENST00000547118 1133 ntBASIC20.24■□□□□ 0.83
BRF1Q92994 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.24■□□□□ 0.83
BRF1Q92994 AL022326.1-202ENST00000641533 845 ntBASIC20.24■□□□□ 0.83
BRF1Q92994 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.24■□□□□ 0.83
BRF1Q92994 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.24■□□□□ 0.83
BRF1Q92994 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.24■□□□□ 0.83
BRF1Q92994 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.24■□□□□ 0.83
BRF1Q92994 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRF1Q92994 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
BRF1Q92994 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.23■□□□□ 0.83
BRF1Q92994 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
BRF1Q92994 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
BRF1Q92994 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.23■□□□□ 0.83
BRF1Q92994 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.23■□□□□ 0.83
BRF1Q92994 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
BRF1Q92994 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.23■□□□□ 0.83
BRF1Q92994 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.23■□□□□ 0.83
BRF1Q92994 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
BRF1Q92994 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
BRF1Q92994 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BRF1Q92994 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
BRF1Q92994 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms