Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 AC092053.1-201ENST00000605787 1936 ntBASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 AKR1C7P-201ENST00000305623 895 ntBASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 IFNL4P1-201ENST00000607083 540 ntBASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 SCARNA2-201ENST00000458748 420 ntBASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 AC022211.2-201ENST00000585075 2527 ntBASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CCDC65Q8IXS2 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 NCF1C-201ENST00000438382 1427 ntBASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 SART3-203ENST00000546611 1184 ntBASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 AD000864.1-201ENST00000624076 2295 ntBASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC65Q8IXS2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC65Q8IXS2 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms