Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CICP20-201ENST00000443330 2801 ntBASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28AQ8IWP9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 AC013268.4-201ENST00000637413 2228 ntBASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 AC107918.4-201ENST00000641966 3141 ntBASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 TSPY21P-201ENST00000433481 731 ntBASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 TSPY6P-201ENST00000448518 926 ntBASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 GXYLT1P5-201ENST00000614548 1189 ntBASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28AQ8IWP9 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 PTENP1-202ENST00000532280 3996 ntBASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 AL138781.1-201ENST00000566567 1274 ntBASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 AL109923.1-201ENST00000618799 583 ntBASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28AQ8IWP9 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms