Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 RN7SL837P-201ENST00000463010 287 ntBASIC18■□□□□ 0.47
CHD9Q3L8U1 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHD9Q3L8U1 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 REXO1L6P-201ENST00000603433 1515 ntBASIC17.99■□□□□ 0.47
CHD9Q3L8U1 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.99■□□□□ 0.47
CHD9Q3L8U1 SPDYE18-201ENST00000510091 1050 ntBASIC17.99■□□□□ 0.47
CHD9Q3L8U1 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 RARRES2P9-201ENST00000565168 469 ntBASIC17.99■□□□□ 0.47
CHD9Q3L8U1 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 BTBD7P1-201ENST00000447253 1453 ntBASIC17.99■□□□□ 0.47
CHD9Q3L8U1 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.99■□□□□ 0.47
CHD9Q3L8U1 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 RPL37AP1-201ENST00000412502 279 ntBASIC17.98■□□□□ 0.47
CHD9Q3L8U1 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 AC105233.2-201ENST00000523697 349 ntBASIC17.98■□□□□ 0.47
CHD9Q3L8U1 AF228730.5-201ENST00000530288 346 ntBASIC17.98■□□□□ 0.47
CHD9Q3L8U1 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHD9Q3L8U1 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHD9Q3L8U1 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.96■□□□□ 0.47
CHD9Q3L8U1 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms