Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC20.19■□□□□ 0.82
RHBDL3P58872 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 AC009093.7-201ENST00000623853 1223 ntBASIC20.19■□□□□ 0.82
RHBDL3P58872 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RHBDL3P58872 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC20.19■□□□□ 0.82
RHBDL3P58872 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 AC067852.2-201ENST00000590513 2313 ntBASIC20.19■□□□□ 0.82
RHBDL3P58872 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.19■□□□□ 0.82
RHBDL3P58872 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.19■□□□□ 0.82
RHBDL3P58872 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RHBDL3P58872 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RHBDL3P58872 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
RHBDL3P58872 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
RHBDL3P58872 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
RHBDL3P58872 AC068880.1-201ENST00000507289 2297 ntBASIC20.18■□□□□ 0.82
RHBDL3P58872 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC20.18■□□□□ 0.82
RHBDL3P58872 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.18■□□□□ 0.82
RHBDL3P58872 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC20.18■□□□□ 0.82
RHBDL3P58872 FAM58DP-201ENST00000428076 619 ntBASIC20.18■□□□□ 0.82
RHBDL3P58872 SPDYE11-202ENST00000450699 704 ntBASIC20.18■□□□□ 0.82
RHBDL3P58872 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RHBDL3P58872 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
RHBDL3P58872 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC20.18■□□□□ 0.82
RHBDL3P58872 SPDYE9P-201ENST00000570642 692 ntBASIC20.18■□□□□ 0.82
RHBDL3P58872 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.18■□□□□ 0.82
RHBDL3P58872 AC091167.2-201ENST00000579581 588 ntBASIC20.18■□□□□ 0.82
RHBDL3P58872 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC20.18■□□□□ 0.82
RHBDL3P58872 SPDYE10P-202ENST00000612005 668 ntBASIC20.18■□□□□ 0.82
RHBDL3P58872 SPDYE8P-202ENST00000612377 668 ntBASIC20.18■□□□□ 0.82
RHBDL3P58872 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
RHBDL3P58872 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC20.18■□□□□ 0.82
RHBDL3P58872 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
RHBDL3P58872 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20.18■□□□□ 0.82
RHBDL3P58872 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC20.18■□□□□ 0.82
RHBDL3P58872 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.18■□□□□ 0.82
RHBDL3P58872 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RHBDL3P58872 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.18■□□□□ 0.82
RHBDL3P58872 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC20.18■□□□□ 0.82
RHBDL3P58872 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.17■□□□□ 0.82
RHBDL3P58872 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.17■□□□□ 0.82
RHBDL3P58872 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
RHBDL3P58872 HCG4-201ENST00000418983 998 ntBASIC20.17■□□□□ 0.82
RHBDL3P58872 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC20.17■□□□□ 0.82
RHBDL3P58872 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC20.17■□□□□ 0.82
RHBDL3P58872 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC20.17■□□□□ 0.82
RHBDL3P58872 AC069335.1-201ENST00000489972 472 ntBASIC20.17■□□□□ 0.82
RHBDL3P58872 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
RHBDL3P58872 LINC01225-203ENST00000563550 1244 ntBASIC20.17■□□□□ 0.82
RHBDL3P58872 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC20.17■□□□□ 0.82
RHBDL3P58872 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC20.17■□□□□ 0.82
RHBDL3P58872 LINC00628-201ENST00000628516 1289 ntBASIC20.17■□□□□ 0.82
RHBDL3P58872 AKAP8P1-201ENST00000434743 1349 ntBASIC20.17■□□□□ 0.82
RHBDL3P58872 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC20.17■□□□□ 0.82
RHBDL3P58872 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
RHBDL3P58872 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RHBDL3P58872 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.17■□□□□ 0.82
RHBDL3P58872 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RHBDL3P58872 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.16■□□□□ 0.82
RHBDL3P58872 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.16■□□□□ 0.82
RHBDL3P58872 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RHBDL3P58872 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RHBDL3P58872 RNU1-129P-201ENST00000384064 167 ntBASIC20.16■□□□□ 0.82
RHBDL3P58872 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.16■□□□□ 0.82
RHBDL3P58872 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms