Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.45■□□□□ 0.54
VCPP55072 MIR1199-201ENST00000621445 119 ntBASIC18.45■□□□□ 0.54
VCPP55072 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.45■□□□□ 0.54
VCPP55072 AC107918.4-202ENST00000641623 219 ntBASIC18.45■□□□□ 0.54
VCPP55072 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCPP55072 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VCPP55072 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.45■□□□□ 0.54
VCPP55072 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VCPP55072 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VCPP55072 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCPP55072 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCPP55072 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCPP55072 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.45■□□□□ 0.54
VCPP55072 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.45■□□□□ 0.54
VCPP55072 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
VCPP55072 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
VCPP55072 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 AC080080.1-201ENST00000625121 2420 ntBASIC18.44■□□□□ 0.54
VCPP55072 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
VCPP55072 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.44■□□□□ 0.54
VCPP55072 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
VCPP55072 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 BCRP1-201ENST00000444246 691 ntBASIC18.44■□□□□ 0.54
VCPP55072 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.44■□□□□ 0.54
VCPP55072 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VCPP55072 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.44■□□□□ 0.54
VCPP55072 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.44■□□□□ 0.54
VCPP55072 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VCPP55072 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VCPP55072 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.43■□□□□ 0.54
VCPP55072 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
VCPP55072 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
VCPP55072 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
VCPP55072 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.43■□□□□ 0.54
VCPP55072 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.43■□□□□ 0.54
VCPP55072 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
VCPP55072 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.43■□□□□ 0.54
VCPP55072 KRT18P2-201ENST00000447938 1258 ntBASIC18.43■□□□□ 0.54
VCPP55072 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.43■□□□□ 0.54
VCPP55072 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.43■□□□□ 0.54
VCPP55072 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.43■□□□□ 0.54
VCPP55072 AC011467.2-201ENST00000598425 242 ntBASIC18.43■□□□□ 0.54
VCPP55072 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.43■□□□□ 0.54
VCPP55072 MTDHP4-201ENST00000600287 670 ntBASIC18.43■□□□□ 0.54
VCPP55072 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
VCPP55072 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.43■□□□□ 0.54
VCPP55072 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.43■□□□□ 0.54
VCPP55072 REXO1L11P-201ENST00000620964 1927 ntBASIC18.43■□□□□ 0.54
VCPP55072 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.43■□□□□ 0.54
VCPP55072 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VCPP55072 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.42■□□□□ 0.54
VCPP55072 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.42■□□□□ 0.54
VCPP55072 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCPP55072 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCPP55072 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCPP55072 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCPP55072 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.42■□□□□ 0.54
VCPP55072 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.42■□□□□ 0.54
VCPP55072 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCPP55072 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCPP55072 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCPP55072 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCPP55072 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VCPP55072 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.42■□□□□ 0.54
VCPP55072 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms