Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
LIG3P49916 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIG3P49916 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
LIG3P49916 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIG3P49916 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LIG3P49916 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIG3P49916 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIG3P49916 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIG3P49916 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIG3P49916 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
LIG3P49916 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.16■□□□□ 0.5
LIG3P49916 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.16■□□□□ 0.5
LIG3P49916 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
LIG3P49916 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
LIG3P49916 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.16■□□□□ 0.5
LIG3P49916 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.16■□□□□ 0.5
LIG3P49916 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.16■□□□□ 0.5
LIG3P49916 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.16■□□□□ 0.5
LIG3P49916 GUSBP12-201ENST00000513727 720 ntBASIC18.16■□□□□ 0.5
LIG3P49916 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.16■□□□□ 0.5
LIG3P49916 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.16■□□□□ 0.5
LIG3P49916 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.16■□□□□ 0.5
LIG3P49916 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.16■□□□□ 0.5
LIG3P49916 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.16■□□□□ 0.5
LIG3P49916 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.16■□□□□ 0.5
LIG3P49916 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIG3P49916 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.16■□□□□ 0.5
LIG3P49916 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.16■□□□□ 0.5
LIG3P49916 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.15■□□□□ 0.5
LIG3P49916 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.15■□□□□ 0.5
LIG3P49916 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
LIG3P49916 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
LIG3P49916 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.15■□□□□ 0.5
LIG3P49916 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.15■□□□□ 0.5
LIG3P49916 DRAXINP1-201ENST00000437611 948 ntBASIC18.15■□□□□ 0.5
LIG3P49916 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
LIG3P49916 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 TPSP2-201ENST00000561760 610 ntBASIC18.15■□□□□ 0.5
LIG3P49916 CLEC4GP1-201ENST00000596555 870 ntBASIC18.15■□□□□ 0.5
LIG3P49916 AC124864.1-201ENST00000623408 392 ntBASIC18.15■□□□□ 0.5
LIG3P49916 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
LIG3P49916 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 AC005052.1-201ENST00000625181 2492 ntBASIC18.15■□□□□ 0.5
LIG3P49916 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
LIG3P49916 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
LIG3P49916 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.15■□□□□ 0.5
LIG3P49916 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.15■□□□□ 0.5
LIG3P49916 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIG3P49916 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIG3P49916 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.14■□□□□ 0.5
LIG3P49916 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIG3P49916 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIG3P49916 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
LIG3P49916 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.14■□□□□ 0.49
LIG3P49916 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.14■□□□□ 0.49
LIG3P49916 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
LIG3P49916 LINC00265-3P-201ENST00000447588 903 ntBASIC18.14■□□□□ 0.49
LIG3P49916 RN7SL606P-201ENST00000472779 293 ntBASIC18.14■□□□□ 0.49
LIG3P49916 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIG3P49916 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms