Protein–RNA interactions for Protein: P48729

CSNK1A1, Casein kinase I isoform alpha, humanhuman

Predictions only

Length 337 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1A1P48729 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.34■□□□□ 0.05
CSNK1A1P48729 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CSNK1A1P48729 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.34■□□□□ 0.05
CSNK1A1P48729 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
CSNK1A1P48729 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CSNK1A1P48729 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CSNK1A1P48729 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CSNK1A1P48729 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.33■□□□□ 0.05
CSNK1A1P48729 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CSNK1A1P48729 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CSNK1A1P48729 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.33■□□□□ 0.05
CSNK1A1P48729 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CSNK1A1P48729 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CSNK1A1P48729 AL356309.3-201ENST00000624132 1934 ntBASIC15.33■□□□□ 0.05
CSNK1A1P48729 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
CSNK1A1P48729 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CSNK1A1P48729 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 SLC25A1P3-201ENST00000395415 828 ntBASIC15.33■□□□□ 0.04
CSNK1A1P48729 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 BX005266.1-201ENST00000473402 457 ntBASIC15.33■□□□□ 0.04
CSNK1A1P48729 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 AC008608.2-201ENST00000606089 416 ntBASIC15.33■□□□□ 0.04
CSNK1A1P48729 IFNL4P1-201ENST00000607083 540 ntBASIC15.33■□□□□ 0.04
CSNK1A1P48729 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 REXO1L6P-202ENST00000619970 1078 ntBASIC15.33■□□□□ 0.04
CSNK1A1P48729 AL355877.3-201ENST00000622820 899 ntBASIC15.33■□□□□ 0.04
CSNK1A1P48729 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.33■□□□□ 0.04
CSNK1A1P48729 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.33■□□□□ 0.04
CSNK1A1P48729 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CSNK1A1P48729 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.33■□□□□ 0.04
CSNK1A1P48729 AC097637.2-201ENST00000624096 1997 ntBASIC15.33■□□□□ 0.04
CSNK1A1P48729 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 EGFEM1P-202ENST00000431685 1563 ntBASIC15.32■□□□□ 0.04
CSNK1A1P48729 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 LINC02012-201ENST00000608206 1725 ntBASIC15.32■□□□□ 0.04
CSNK1A1P48729 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 SAPCD2P3-201ENST00000455031 850 ntBASIC15.32■□□□□ 0.04
CSNK1A1P48729 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 AL022326.1-202ENST00000641533 845 ntBASIC15.32■□□□□ 0.04
CSNK1A1P48729 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
CSNK1A1P48729 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSNK1A1P48729 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms