Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15□□□□□ -0.01
COL8A1P27658 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
COL8A1P27658 SLC25A6P5-201ENST00000435663 894 ntBASIC15□□□□□ -0.01
COL8A1P27658 SPCS2P4-201ENST00000436160 681 ntBASIC15□□□□□ -0.01
COL8A1P27658 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15□□□□□ -0.01
COL8A1P27658 SPDYE14P-201ENST00000442619 822 ntBASIC15□□□□□ -0.01
COL8A1P27658 AC004890.2-204ENST00000481968 304 ntBASIC15□□□□□ -0.01
COL8A1P27658 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL8A1P27658 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15□□□□□ -0.01
COL8A1P27658 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15□□□□□ -0.01
COL8A1P27658 AC019129.2-201ENST00000609837 1235 ntBASIC15□□□□□ -0.01
COL8A1P27658 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
COL8A1P27658 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15□□□□□ -0.01
COL8A1P27658 MIR6080-201ENST00000617359 66 ntBASIC15□□□□□ -0.01
COL8A1P27658 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 SNX12-206ENST00000622259 661 ntTSL 5 BASIC15□□□□□ -0.01
COL8A1P27658 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 NEFHP1-201ENST00000412845 2629 ntBASIC15□□□□□ -0.01
COL8A1P27658 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15□□□□□ -0.01
COL8A1P27658 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC15□□□□□ -0.01
COL8A1P27658 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 CU639417.3-201ENST00000624240 1404 ntBASIC15□□□□□ -0.01
COL8A1P27658 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15□□□□□ -0.01
COL8A1P27658 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL8A1P27658 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
COL8A1P27658 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.99□□□□□ -0.01
COL8A1P27658 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.99□□□□□ -0.01
COL8A1P27658 RN7SL589P-201ENST00000481268 310 ntBASIC14.99□□□□□ -0.01
COL8A1P27658 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.99□□□□□ -0.01
COL8A1P27658 IGHV3-62-201ENST00000520057 340 ntBASIC14.99□□□□□ -0.01
COL8A1P27658 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.99□□□□□ -0.01
COL8A1P27658 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.99□□□□□ -0.01
COL8A1P27658 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.99□□□□□ -0.01
COL8A1P27658 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.99□□□□□ -0.01
COL8A1P27658 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC14.99□□□□□ -0.01
COL8A1P27658 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.99□□□□□ -0.01
COL8A1P27658 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.99□□□□□ -0.01
COL8A1P27658 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.99□□□□□ -0.01
COL8A1P27658 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC14.99□□□□□ -0.01
COL8A1P27658 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
COL8A1P27658 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC14.99□□□□□ -0.01
COL8A1P27658 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL8A1P27658 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
COL8A1P27658 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 GMCL1P1-201ENST00000463439 1581 ntBASIC14.98□□□□□ -0.01
COL8A1P27658 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
COL8A1P27658 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.98□□□□□ -0.01
COL8A1P27658 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
COL8A1P27658 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
COL8A1P27658 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC14.98□□□□□ -0.01
COL8A1P27658 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
COL8A1P27658 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.98□□□□□ -0.01
COL8A1P27658 SPDYE7P-202ENST00000420373 878 ntBASIC14.98□□□□□ -0.01
COL8A1P27658 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
COL8A1P27658 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 RPS2P32-201ENST00000439199 892 ntBASIC14.98□□□□□ -0.01
COL8A1P27658 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.98□□□□□ -0.01
COL8A1P27658 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.98□□□□□ -0.01
COL8A1P27658 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.98□□□□□ -0.01
COL8A1P27658 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
COL8A1P27658 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.98□□□□□ -0.01
COL8A1P27658 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL8A1P27658 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms