Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SLC25A1P3-201ENST00000395415 828 ntBASIC18.11■□□□□ 0.49
BDNFP23560 KRT18P13-201ENST00000400056 1290 ntBASIC18.11■□□□□ 0.49
BDNFP23560 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.11■□□□□ 0.49
BDNFP23560 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.11■□□□□ 0.49
BDNFP23560 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.11■□□□□ 0.49
BDNFP23560 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.11■□□□□ 0.49
BDNFP23560 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.11■□□□□ 0.49
BDNFP23560 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
BDNFP23560 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
BDNFP23560 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
BDNFP23560 PP12613-201ENST00000424958 2230 ntBASIC18.11■□□□□ 0.49
BDNFP23560 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
BDNFP23560 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BDNFP23560 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
BDNFP23560 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
BDNFP23560 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.1■□□□□ 0.49
BDNFP23560 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
BDNFP23560 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
BDNFP23560 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 AC087163.2-201ENST00000457299 853 ntBASIC18.1■□□□□ 0.49
BDNFP23560 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.1■□□□□ 0.49
BDNFP23560 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.1■□□□□ 0.49
BDNFP23560 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
BDNFP23560 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
BDNFP23560 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BDNFP23560 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.09■□□□□ 0.49
BDNFP23560 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
BDNFP23560 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 SLC25A6P2-201ENST00000497974 877 ntBASIC18.09■□□□□ 0.49
BDNFP23560 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.09■□□□□ 0.49
BDNFP23560 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.09■□□□□ 0.49
BDNFP23560 AC010507.1-201ENST00000633895 436 ntBASIC18.09■□□□□ 0.49
BDNFP23560 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.09■□□□□ 0.49
BDNFP23560 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.09■□□□□ 0.49
BDNFP23560 AC092865.6-201ENST00000642101 219 ntBASIC18.09■□□□□ 0.49
BDNFP23560 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
BDNFP23560 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.09■□□□□ 0.49
BDNFP23560 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.09■□□□□ 0.49
BDNFP23560 AC116353.5-201ENST00000638148 1699 ntBASIC18.09■□□□□ 0.49
BDNFP23560 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BDNFP23560 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
BDNFP23560 EGFEM1P-202ENST00000431685 1563 ntBASIC18.08■□□□□ 0.49
BDNFP23560 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.08■□□□□ 0.49
BDNFP23560 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
BDNFP23560 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
BDNFP23560 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
BDNFP23560 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
BDNFP23560 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.08■□□□□ 0.49
BDNFP23560 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
BDNFP23560 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.08■□□□□ 0.49
BDNFP23560 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
BDNFP23560 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
BDNFP23560 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.08■□□□□ 0.48
BDNFP23560 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
BDNFP23560 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
BDNFP23560 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.08■□□□□ 0.48
BDNFP23560 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
BDNFP23560 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.08■□□□□ 0.48
BDNFP23560 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.08■□□□□ 0.48
BDNFP23560 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
BDNFP23560 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms